Pairwise Alignments

Query, 1196 a.a., transcription-repair coupling factor from Bifidobacterium breve UCC2003

Subject, 1148 a.a., transcription-repair coupling factor (mfd) from Pseudomonas stutzeri RCH2

 Score =  620 bits (1599), Expect = 0.0
 Identities = 412/1138 (36%), Positives = 617/1138 (54%), Gaps = 122/1138 (10%)

Query: 66   ALAAAIAQGVNGGAGKPVVLVVASGREAEETVGSLRSWYDGDPNDIAQLEAWETLPHERL 125
            AL+ AIA+  +  A +  +L+ A  + AE     L  +  G P  +     WETLP++  
Sbjct: 25   ALSLAIAEAASN-AKRFTLLLTADSQSAERLQEELAFFAPGLP--VLHFPDWETLPYDIF 81

Query: 126  SPRADTVASRMAVFRRLKHPSDANPMFGPIRILVMPIRSLIQPVVQG---LGDVEPLVFT 182
            SP  D V+ R++   +L   S          +LV+PI + +  +      LG    LV  
Sbjct: 82   SPHQDIVSQRISALYQLPELSHG--------VLVVPITTALHRLAPKRFLLGS--SLVLD 131

Query: 183  VGEDLPLDEAAKRLIENAYTRVELVMDRGEFAVRGGILDVFPPTAPHPVRIEFFGDEIDT 242
            VG+ L +++   RL    Y  V+ V + GEFAVRG ++D+FP  +P P RI+ F DEI+T
Sbjct: 132  VGQKLDVEQMRLRLEAAGYRCVDTVYEHGEFAVRGALIDLFPMGSPLPYRIDLFDDEIET 191

Query: 243  IKEFHASDQRTYGEGLKTIWATACRELQLTDAVRTRAKALIGSIPNAE----DMLESIAN 298
            ++ F   +QR+  + +++I     RE  L     T  +A      + +     + + ++ 
Sbjct: 192  LRTFDPENQRSIDK-VESIRLLPAREFPLKKEAVTGFRARFRERFDVDFRRCPIYQDLST 250

Query: 299  AIPVEGMESLMPALVDHLEPVGSMLPKHAVVLLSDPEKLRRSAEDLAKTANEFLAASWHV 358
             I   G+E  +P   +    +   LP+ + V          S   + + A +F    W  
Sbjct: 251  GITPAGIEYYLPLFYEETATLFDYLPEDSQVF---------SLPGIEQAAEQF----WSD 297

Query: 359  AASGH-----GAGAPISFDEASFLDYAETISSLEYSEHPVIRLTSFGVDTTLAGHVQLDA 413
              + +         P+      F+   +  + L+    P +  +   V++ + G  + +A
Sbjct: 298  VRNRYEERRVDPERPLLPPAELFMPVEDCFARLKL--WPRVVASQQDVESGI-GRERFNA 354

Query: 414  QNPAEFRGDEAKASQGIDGLLDA----GFHVTITAAAAGT-------LARLKRALNTTGI 462
            Q   E    E+KAS+ +  L          V  TA +AG        LARLK        
Sbjct: 355  QALPEL-AIESKASEPLGKLRQFLESYPGRVLFTAESAGRREVLLELLARLK-------- 405

Query: 463  TTFDTIRSQAIDGFVDNAAK-------------------IALLTERDLTGRSSAVAVAKT 503
                 +R Q +DG+ D  A                    +AL+ E  L G+         
Sbjct: 406  -----LRPQEVDGWTDFLASDQRLAITIAPLDEGLQLDDVALVAESPLFGQR-----VMQ 455

Query: 504  PKRRRKAID--------LVELKKGDYVVHEQHGIGRFIEMRQRTIGTGANKTTREYLVIE 555
             +RR K+ D        L EL++G  VVH  HG+GR+  +    I   A    +E+L+++
Sbjct: 456  RRRREKSRDGGENVIKNLTELREGSPVVHIDHGVGRYQGLTTLEIEGQA----QEFLLLQ 511

Query: 556  YAPSKRGAPADKLFIPTDQLDQVSKYIGAE---APKLNKLGGSDWAATKAKARKHVHEIA 612
            YA         KL++P   L  +++Y G++   AP L++LG   W   K KA + V ++A
Sbjct: 512  YAEEA------KLYVPVASLHLIARYTGSDDALAP-LHRLGSETWQKAKRKAAEQVRDVA 564

Query: 613  DDLIKLYSARQRAKGFAFSPDTPWQKELEDAFPYQETADQLTTIDEVKSDMEKPVPMDRL 672
             +L+ +Y+ R   +G+AF       +     FP++ET DQ   ID V+ D+    PMDRL
Sbjct: 565  AELLDIYARRAAREGYAFKDPQVDYETFAAGFPFEETPDQQAAIDAVREDLLSAKPMDRL 624

Query: 673  ICGDVGFGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHQETFTDRFEGFPVNVAAMSR 732
            +CGDVGFGKTE+A+RAAF AV  G+QV VLVPTTLL QQH  +F DRF  +PV V  MSR
Sbjct: 625  VCGDVGFGKTEVAMRAAFIAVHGGRQVGVLVPTTLLAQQHYNSFRDRFADWPVRVEVMSR 684

Query: 733  FQTTKEINATIEGLENGTVDVVIGTHKLLNPKIKFKDLGLVIIDEEQRFGVEHKETLKAL 792
            F++ KE+   I  L  G +D++IGTHKLL   +KF +LGLVIIDEE RFGV  KE LKAL
Sbjct: 685  FKSAKEVQNAIAELAEGKIDILIGTHKLLQDDVKFSNLGLVIIDEEHRFGVRQKEQLKAL 744

Query: 793  RTNVDVLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLPVLTYVGAYEDAQVTAAVRRE 852
            R+ VD+L+L+ATPIPRTL M++ G+R++S +ATPP  RL V T+V   ++  +  A+ RE
Sbjct: 745  RSEVDILTLTATPIPRTLNMSIAGMRDLSIIATPPARRLSVRTFVMEQQNTVIKEALLRE 804

Query: 853  LLRGGQVFYVHNRVQDISSIADKIHTLVPESRVGIAHGKMGEKQLDQIIRDFWHRDIDVL 912
            LLRGGQV+Y+HN V+ I   A  +  LVPE+RV I HG+M E+ L+Q++ DF+H+  +VL
Sbjct: 805  LLRGGQVYYLHNDVKTIEKCAADLQALVPEARVAIGHGQMRERDLEQVMSDFYHKRFNVL 864

Query: 913  VCTTIIETGLDISNANTLIVDHADRFGLSQLHQLRGRVGRGRERAYAYFLYDPSKPMTEQ 972
            V +TIIETG+D+ +ANT+I++ AD+FGL+QLHQLRGRVGR   +AYAY L    K MT+ 
Sbjct: 865  VASTIIETGIDVPSANTIIIERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPTRKAMTDD 924

Query: 973  SHDRLATIAQNTALGSGFDVAMKDLELRGTGNLLGDEQSGHIEGVGFDLYVRMVSEAVEK 1032
            +  RL  IA    LG+GF +A  DLE+RG G LLG+ QSG I+ VGF LY+ M+  AV+ 
Sbjct: 925  AQKRLEAIANAQDLGAGFVLATHDLEIRGAGELLGEGQSGQIQAVGFTLYMEMLERAVKA 984

Query: 1033 YKEPDED--VEPV--SVSIDLPIEASIPIDYIDSDKLRLEAYRKLASARNEADLKDLKEE 1088
             ++ ++    +P+     I+L + A IP DY+     RL  Y+++A+A +E  LK+L+ E
Sbjct: 985  IRKGEQPNLEQPLGGGPEINLRLPALIPEDYLPDVHARLILYKRIANAADEDGLKELQVE 1044

Query: 1089 LTDRYGKPPVEFETLFDVARLKFKARKLGVSEILA--QSNRVRIG---RIDPPESIQM 1141
            + DR+G  P   + L  +  LK +A KLG+++I A  Q  R+       +DP   I++
Sbjct: 1045 MIDRFGLLPEPTKNLVRLTLLKLQAEKLGITKIDAGPQGGRIEFSADTSVDPMVLIKL 1102