Pairwise Alignments

Query, 1196 a.a., transcription-repair coupling factor from Bifidobacterium breve UCC2003

Subject, 1177 a.a., transcription-repair-coupling factor from Marinobacter adhaerens HP15

 Score =  630 bits (1624), Expect = 0.0
 Identities = 404/1068 (37%), Positives = 577/1068 (54%), Gaps = 86/1068 (8%)

Query: 107  DPNDIAQLEAWETLPHERLSPRADTVASRMAVFRRLKHPSDANPMFGPIRILVMPIRSLI 166
            D  ++  L  WETLP++  SP  D ++ R+    RL   S          +LV+P R+L+
Sbjct: 87   DGLELLSLPDWETLPYDLFSPHQDIISRRIRTLHRLPATSHG--------VLVVPARTLM 138

Query: 167  Q---PVVQGLGDVEPLVFTVGEDLPLDEAAKRLIENAYTRVELVMDRGEFAVRGGILDVF 223
                PV    G+   L+  VG+ L ++    +L    Y   E V + GE+AVRG ILD+F
Sbjct: 139  HRLPPVNYLQGNT--LLLEVGQSLDIESWRMQLEAAGYRHAENVYEHGEYAVRGAILDIF 196

Query: 224  PPTAPHPVRIEFFGDEIDTIKEFHASDQRTYGEGLKTIWATACRELQLTDAVRTRAKAL- 282
            P  A  P RI+ F DEI+T++ F    QR+  + ++ I      E       R+  ++  
Sbjct: 197  PMGASQPFRIDLFDDEIETLRTFDPETQRSI-DRIERIELLPAFEFPWHKEARSGFRSRW 255

Query: 283  IGSIPNAED---MLESIANAIPVEGMESLMPALVDHLEPVGSMLPKHAVVLLSDPEKLRR 339
                P+A+    + + + + I   G+E  +P   D    +   LP    V  +D      
Sbjct: 256  FEQFPDADKDTPIYQDVTHGITPPGIEYYLPLFFDETATLFDYLPGATHVFTADGLNDAV 315

Query: 340  SAEDLAKTANEFLAASWHVAASGHGAGAPISFDEASFLDYAETISSLEYSEHPVIRLT-- 397
            S  D ++T N +           H    PI   +  FL   E    L+      +     
Sbjct: 316  SHFD-SETRNRY-------EDRRHDRLRPILPPKRLFLQQEELFGQLKAFPRVTVSAETK 367

Query: 398  ----SFGVDTTLAGHVQLDAQNPAEFRGDEAKASQGIDGLLDAGFHVTITAAAAGTLARL 453
                S    TT    + +D +       D A   +   G  D   HV I A ++G    L
Sbjct: 368  DAAGSVNCPTTTLPDIAMDGR-----AADPAGRLKRFLGEFDG--HVLICAESSGRREAL 420

Query: 454  KRALNTTGITTFDTIRSQAI----------------DGFVDNAAKIALLTERDLTGRSSA 497
               L   G+        QA                  G V     +AL+TE  L G    
Sbjct: 421  MENLGEQGVELKTLSGWQAFLDDKESSVAITIAPMEQGLVLPEHSVALITETALFGER-- 478

Query: 498  VAVAKTPKRRRKAI--------DLVELKKGDYVVHEQHGIGRFIEMRQRTIGTGANKTTR 549
                   +RR K          DL EL+ G  VVH  HG+GR++ +   T+   A+    
Sbjct: 479  ---VLQRRRREKPTETDDAGFRDLSELRIGAPVVHIDHGVGRYLGLETITVEGEAS---- 531

Query: 550  EYLVIEYAPSKRGAPADKLFIPTDQLDQVSKYIG--AEAPKLNKLGGSDWAATKAKARKH 607
            E+L++ YA         KL++P   L  +S+Y G   E   L+KLG   W+  K KA + 
Sbjct: 532  EFLMLGYAGGS------KLYVPVSSLHLISRYAGNDTEHAPLHKLGTDRWSTAKQKALEK 585

Query: 608  VHEIADDLIKLYSARQRAKGFAFSPDTPWQKELEDAFPYQETADQLTTIDEVKSDMEKPV 667
            + + A +L+ +Y+ R+  KGF+F       +     FP++ET DQ   I  V  DM    
Sbjct: 586  IRDTAAELLDVYARREARKGFSFEDPKEAYRAFAAGFPFEETPDQQVAIQSVFEDMTSEQ 645

Query: 668  PMDRLICGDVGFGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHQETFTDRFEGFPVNV 727
            PMDRL+CGDVGFGKTE+A+RAAF A   GKQVAVLVPTTLL QQH E+F DRF   PV V
Sbjct: 646  PMDRLVCGDVGFGKTEVAMRAAFLATWSGKQVAVLVPTTLLAQQHYESFRDRFSDTPVQV 705

Query: 728  AAMSRFQTTKEINATIEGLENGTVDVVIGTHKLLNPKIKFKDLGLVIIDEEQRFGVEHKE 787
              +SRF+T  + +  +E +ENG  D+VIGTHKLL   IKFK+LGLVIIDEE RFGV+ KE
Sbjct: 706  ELLSRFRTAGQTSKALEAVENGRADIVIGTHKLLQGDIKFKNLGLVIIDEEHRFGVQQKE 765

Query: 788  TLKALRTNVDVLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLPVLTYVGAYEDAQVTA 847
             LKALR  VD+L+L+ATPIPRTL MA+  +R++S +ATPP  RL V T+V   ++A V  
Sbjct: 766  RLKALRAEVDMLNLTATPIPRTLNMAMGHLRDLSIIATPPARRLSVKTFVRQKDNAMVKE 825

Query: 848  AVRRELLRGGQVFYVHNRVQDISSIADKIHTLVPESRVGIAHGKMGEKQLDQIIRDFWHR 907
            A+ RE+LRGGQV+++HN V  I   A+ + +L+PE+RVG+AHG+M E+ L++I+ DF+H+
Sbjct: 826  AILREILRGGQVYFLHNDVATIEKTAEDLRSLIPEARVGVAHGQMRERDLEKIMSDFYHK 885

Query: 908  DIDVLVCTTIIETGLDISNANTLIVDHADRFGLSQLHQLRGRVGRGRERAYAYFLYDPSK 967
              +VLVCTTIIETG+D+ +ANT+I++ AD+FGL+QLHQLRGRVGR   +AYAY L  P K
Sbjct: 886  RFNVLVCTTIIETGIDVPSANTIIIERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPPK 945

Query: 968  PMTEQSHDRLATIAQNTALGSGFDVAMKDLELRGTGNLLGDEQSGHIEGVGFDLYVRMVS 1027
             +T  +  RL  I++   LG+GF +A  DLE+RG G LLG+EQSG IE +GF LY++++ 
Sbjct: 946  SITADAKKRLDAISEAQDLGAGFMLATHDLEIRGAGELLGEEQSGQIESIGFTLYMQLLD 1005

Query: 1028 EAVEKYKE---PDEDVEPVS--VSIDLPIEASIPIDYIDSDKLRLEAYRKLASARNEADL 1082
            EAV+  +E   P+ D+ P+S    ++L I A IP DY+     RL  Y+++AS  +   L
Sbjct: 1006 EAVKAIREGRTPNADL-PLSHGTEMNLRIPALIPEDYLPDVHNRLMLYKRIASVDSPEAL 1064

Query: 1083 KDLKEELTDRYGKPPVEFETLFDVARLKFKARKLGVSEILAQSNRVRI 1130
            K+L+ E+ DR+G  P   + L     L+ +A  LG+ ++ A     R+
Sbjct: 1065 KELQVEMIDRFGLLPDPAKNLIRQTELRLRAEALGIVKVDAGKEWARL 1112