Pairwise Alignments

Query, 1196 a.a., transcription-repair coupling factor from Bifidobacterium breve UCC2003

Subject, 1164 a.a., transcription-repair coupling factor (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  623 bits (1606), Expect = 0.0
 Identities = 393/1051 (37%), Positives = 577/1051 (54%), Gaps = 88/1051 (8%)

Query: 118  ETLPHERLSPRADTVASRMAVFRRLKHPSDANPMFGPIRILVM--PIRSLIQPVVQGLGD 175
            ETLP++  SP  D ++ R+    ++ H ++ + +  P+  L+M  P +S +   V     
Sbjct: 79   ETLPYDSFSPHQDLISQRLETLSQITH-AEHSVVIVPVTTLMMRLPPKSYLSSNV----- 132

Query: 176  VEPLVFTVGEDLPLDEAAKRLIENAYTRVELVMDRGEFAVRGGILDVFPPTAPHPVRIEF 235
                V   G+   L +  ++L +  Y  VE V + GEFA+RG ILD+FP     P+RIE 
Sbjct: 133  ---FVLKKGDKYQLHDVRQQLTDTGYHLVEQVYEHGEFAIRGSILDIFPTGVNMPLRIEL 189

Query: 236  FGDEIDTIKEFHASDQRTYGEGLKTIWATACRELQLTDAVR--TRAKALIGS-------- 285
            F DE++TI+ F    QR+         +T    ++L  A    T + A+ G         
Sbjct: 190  FDDEVETIRHFDPETQRS---------STPVNAVRLLPAKEFPTDSSAIEGFRQRYRRRF 240

Query: 286  ---IPNAEDMLESIANAIPVEGMESLMPALVDHLEPVGSMLPKHA-VVLLSDPEKLRRSA 341
               +   E + + ++  +   G+E+ +P   D +  +   LPK+  +V L D EK  R+ 
Sbjct: 241  EVIVKEPESVYQLVSRNLMPAGIENYLPLFFDEVSTLFDYLPKNTQLVTLGDIEKSARAH 300

Query: 342  EDLAKTANEFLAASWHVAASGHGAGAPISFDEASFLDYAETISSLEYSEHPVIRLTSFGV 401
                +   E                 P+   +  +L   E  ++  +   P  +  +   
Sbjct: 301  LQEVEIRYEDRRVD---------PLRPLLAPKELYLLIEELFAA--FKPLPRYQFVAPNP 349

Query: 402  DTTLAGHVQLDAQNPAEFRGDEAKASQGIDGLLDAGFHVTITAAAAGTLARLKRALNTTG 461
            DT      Q+DA+   E   +  K  Q +  L D          +A +  R +  L   G
Sbjct: 350  DTNGVA-AQIDARALPEVSANH-KLKQPLIALQDYAEQAPRMLFSAESEGRREALLELLG 407

Query: 462  ITTFDTIRSQAIDGFVDNAAKIAL----LTERDLTGRSSAVAVA---------------- 501
                        D F+ + A++ L    L+   L G  +  AV+                
Sbjct: 408  KIQLKPSVFSHFDEFIQSDARLGLIVSPLSRGCLLGLGAQTAVSIICETELFGQRISQQR 467

Query: 502  KTPKRRRKAID-----LVELKKGDYVVHEQHGIGRFIEMRQRTIGTGANKTTREYLVIEY 556
            +  K+R+ + D     L ELK G  +VH +HG+  +  +   T+ TG      EYL +EY
Sbjct: 468  RREKQRQISNDTLIKNLAELKVGQPIVHLEHGVALYQGLV--TLDTGG--IVAEYLQLEY 523

Query: 557  APSKRGAPADKLFIPTDQLDQVSKY-IGAEAPK-LNKLGGSDWAATKAKARKHVHEIADD 614
            +        DKL++P   L  +S+Y +GA+    LNKLG   WA  K KA + + ++A +
Sbjct: 524  SGG------DKLYVPVSNLHLISRYSVGADGETHLNKLGNDTWAKAKNKAIEKIRDVAAE 577

Query: 615  LIKLYSARQRAKGFAFSPDTPWQKELEDAFPYQETADQLTTIDEVKSDMEKPVPMDRLIC 674
            L+ +Y+ RQ   G +   +     +    FP++ET DQ + I  V +DM+ P  MDRL+C
Sbjct: 578  LLDVYARRQARPGESCEINDEEYAQFAQGFPFEETVDQESAIHAVLADMQSPTAMDRLVC 637

Query: 675  GDVGFGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHQETFTDRFEGFPVNVAAMSRFQ 734
            GDVGFGKTE+A+RAAF AV DGKQV VLVPTTLL QQH E F DRF  +PV +  MSRF+
Sbjct: 638  GDVGFGKTEVAMRAAFVAVNDGKQVVVLVPTTLLAQQHYENFKDRFADWPVVIEVMSRFR 697

Query: 735  TTKEINATIEGLENGTVDVVIGTHKLLNPKIKFKDLGLVIIDEEQRFGVEHKETLKALRT 794
            T KE    ++ LE G VD+VIGTHKLL  + KF++LGL+IIDEE RFGV  KE +KALR 
Sbjct: 698  TAKEQTQVLKQLEEGKVDIVIGTHKLLQSEAKFENLGLLIIDEEHRFGVRQKEKIKALRA 757

Query: 795  NVDVLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLPVLTYVGAYEDAQVTAAVRRELL 854
            NVD+L+L+ATPIPRTL MA++G+R++S +ATPP  RL V T+V   + A V  A+ RE+L
Sbjct: 758  NVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVKTFVRESDPATVREAILREIL 817

Query: 855  RGGQVFYVHNRVQDISSIADKIHTLVPESRVGIAHGKMGEKQLDQIIRDFWHRDIDVLVC 914
            RGGQV+Y+HN V+ I   A  I TL+PE+RV +AHG+M E+ L++++ DF+H+  +VLVC
Sbjct: 818  RGGQVYYLHNNVETIEKCAQDISTLLPEARVVVAHGQMRERDLERVMSDFYHQRFNVLVC 877

Query: 915  TTIIETGLDISNANTLIVDHADRFGLSQLHQLRGRVGRGRERAYAYFLYDPSKPMTEQSH 974
            TTIIETG+D+ +ANT+I++ AD FGL+QLHQLRGRVGR   +AYAY +    K MT  + 
Sbjct: 878  TTIIETGIDVPSANTIIIERADTFGLAQLHQLRGRVGRSHHQAYAYLMTPHPKRMTTDAR 937

Query: 975  DRLATIAQNTALGSGFDVAMKDLELRGTGNLLGDEQSGHIEGVGFDLYVRMVSEAVEKYK 1034
             RL  I     LG+GF +A +DLE+RG G LLGDEQSGHI  +GF LY+ M+  AV+  K
Sbjct: 938  KRLEAIDALEDLGAGFMLATQDLEIRGAGELLGDEQSGHISKIGFSLYMEMLESAVKALK 997

Query: 1035 EPDE----DVEPVSVSIDLPIEASIPIDYIDSDKLRLEAYRKLASARNEADLKDLKEELT 1090
            +  E     +      ++L I A +P DY+    +RL  Y+++AS  +E  L +LK EL 
Sbjct: 998  QGKEPSLAQMLNQQCEMELRIPALLPEDYVGDVNIRLSLYKRIASCDSEEALDELKVELI 1057

Query: 1091 DRYGKPPVEFETLFDVARLKFKARKLGVSEI 1121
            DR+G  P   + L ++   K +A +LG ++I
Sbjct: 1058 DRFGLLPDATKNLMEMTLYKHQATRLGATKI 1088