Pairwise Alignments

Query, 407 a.a., flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase from Bifidobacterium breve UCC2003

Subject, 371 a.a., 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (RefSeq) from Shewanella loihica PV-4

 Score =  316 bits (810), Expect = 6e-91
 Identities = 169/362 (46%), Positives = 235/362 (64%), Gaps = 3/362 (0%)

Query: 26  SESPLHPRRKSHRIMVGSVPVGGGAPISVQSMTNTLTANVPATLQQIAELTAAGCDIVRV 85
           +ESP+  RR S RI VG VP+G GAPI+VQSMTNT T +V AT+ QI  L   G DIVRV
Sbjct: 3   NESPII-RRPSTRIYVGDVPIGDGAPIAVQSMTNTRTTDVEATVAQIRALENVGADIVRV 61

Query: 86  AVPSQDDADALPEICRKSPVPIIADIHFQSKYVFQAIDAGCAAVRVNPGNIRKFNEVGPS 145
           +VP+ D A+A   I +++ VP++ADIHF  +   +  + G   +R+NPGNI     +  S
Sbjct: 62  SVPTMDAAEAFKVIKQQTKVPLVADIHFDYRIALKVAEYGVDCLRINPGNIGNEERIR-S 120

Query: 146 ICKAATDAGISLRIGVNAGSLDKELYAKYGGPTPEALVASALKEAHMFEDVGFHDFKISV 205
           + + A D  I +RIGVN GSL+K+L  KY  PTP+AL+ SA++   + + + F  FK+SV
Sbjct: 121 VVECARDKNIPIRIGVNGGSLEKDLMDKYKEPTPQALLESAMRHVDILDRLNFDQFKVSV 180

Query: 206 KHHDVITMVETYRLLASKGDWPLHLGVTEAGPAWQGTIKSCLAFGALLAEGIGDTIRVSL 265
           K  DV   VE+YRLLA +   PLHLG+TEAG A  G +KS +  G LLAEGIGDT+R+SL
Sbjct: 181 KASDVFLAVESYRLLAKQIKQPLHLGITEAGGARAGAVKSAVGLGMLLAEGIGDTLRISL 240

Query: 266 SAPPVEEVKVGCKLLEYMGLRPRKFDIISCPSCGRAQVDVIQLASAVTEGLKDVTAPIRV 325
           +A PVEE+KVG  +L+ + +R R  + I+CPSC R + DVI   + +   L+DV  P+ V
Sbjct: 241 AADPVEEIKVGFDILKSLRIRSRGINFIACPSCSRQEFDVIATVNELERRLEDVVTPMDV 300

Query: 326 AVMGCIVNGPGEAREADLGVASGNGKGQIFIKG-KVIETVPEDQIVDTLLTKAQEIAAQM 384
           +++GC+VNGPGEA  +D+G+  GN K   +  G +  E    + IVD L  K +   A +
Sbjct: 301 SIIGCVVNGPGEALVSDIGLTGGNRKSGYYDDGVRQKERFDNEHIVDQLEAKIRAKVASV 360

Query: 385 EA 386
           +A
Sbjct: 361 DA 362