Pairwise Alignments

Query, 407 a.a., flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase from Bifidobacterium breve UCC2003

Subject, 420 a.a., 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase from Herbaspirillum seropedicae SmR1

 Score =  195 bits (496), Expect = 2e-54
 Identities = 145/392 (36%), Positives = 206/392 (52%), Gaps = 57/392 (14%)

Query: 33  RRKSHRIMVG----SVPVGGGAPISVQSMTNTLTANVPATLQQIAELTAAGCDIVRVAVP 88
           RR S R+++      + VGGGAP+ VQSMTNT TA+   T  QI +L  AG ++VR+ V 
Sbjct: 13  RRNSRRVVISHGGREIVVGGGAPVMVQSMTNTDTADAIGTAIQIKDLARAGSEVVRLTVN 72

Query: 89  SQDDADALPEICRKSP-----VPIIADIHFQSKYVFQAIDAGCAAV---RVNPGNIRK-- 138
           + + A A+P I  +       VP++ D H+    +         A+   R+NPGN+ K  
Sbjct: 73  TPEAAAAVPAIREQLDRMGVDVPLVGDFHYNGHTLLTEYPECAQALSKYRINPGNVGKGA 132

Query: 139 -----FNEVGPSICKAATDAGISLRIGVNAGSLDKELYAKY-----GGPTP--------E 180
                F ++    CK        +RIGVN GSLD+ L A+      G   P        E
Sbjct: 133 KRDTQFAQMIEVACKYDKP----VRIGVNWGSLDQALLARIMDENAGRAEPWSAQAVMYE 188

Query: 181 ALVASALKEAHMFEDVGFHDFKI--SVKHHDVITMVETYRLLASKGDWPLHLGVTEAGPA 238
           ALV SA++ A   E++G    KI  S K   V  ++  YR LA + D+PLHLG+TEAG  
Sbjct: 189 ALVTSAIENAQRAEELGMAGDKIILSCKVSGVQDLIAVYRELARRCDYPLHLGLTEAGMG 248

Query: 239 WQGTIKSCLAFGALLAEGIGDTIRVSLSAPP----VEEVKVGCKLLEYMGLRPRKFDIIS 294
            +G + S  A   LL EGIGDTIR+SL+  P     +EV VG ++L+ MGLR     +I+
Sbjct: 249 SKGIVASTAALSVLLQEGIGDTIRISLTPEPGGDRTKEVVVGQEILQTMGLRKFTPMVIA 308

Query: 295 CPSCGRAQVDVIQ-LASAVTEGLKDV----------TAPIRVAVMGCIVNGPGEAREADL 343
           CP CGR    V Q LA  +   L++              + VAVMGCIVNGPGE++ A++
Sbjct: 309 CPGCGRTTSTVFQDLADKIQTFLREQMPVWKGKYPGVEAMNVAVMGCIVNGPGESKHANI 368

Query: 344 GVA-SGNGK---GQIFIKGKVIETVPEDQIVD 371
           G++  G G+     +FI G+   T+  + I +
Sbjct: 369 GISLPGTGESPAAPVFIDGEKKMTLRGEHIAE 400