Pairwise Alignments

Query, 297 a.a., PHP domain-containing protein from Bifidobacterium breve UCC2003

Subject, 286 a.a., TrpH family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 84.7 bits (208), Expect = 2e-21
 Identities = 68/267 (25%), Positives = 119/267 (44%), Gaps = 15/267 (5%)

Query: 19  DIHCHTAFSDGTETPAVLAEQSKAVGLKGVSISDHDTTAGWPQAEA--AARKVGLPLLRG 76
           D+H HT  SDG  TP+ L  ++   G++  +I+DHDT AG  +A A   A+   L L+ G
Sbjct: 9   DLHSHTTASDGHLTPSELVARALEKGVQLFAITDHDTVAGLSEARAFNQAQAEPLKLISG 68

Query: 77  TEITATDDGVSVHMLGFQYDPTNQCIVDLFARTRQARLRRTQRMVELMSK-DLPISWESV 135
            EI+   +   +H++   +D T+  ++   A  R+ R +R + +   ++K  +  ++E  
Sbjct: 69  VEISTRWNSYDIHIVALNFDETHAELLRFLAHQRELREQRAEEIGHRLAKAGIEGAYEGA 128

Query: 136 LAQVKEGGNTTIGRPHIADALVAAGVYQNRSEAFADAVSASSKYYIPTPSPTAREVVAAV 195
               K      + R H A  L   G   +    F   ++     Y+P         +  +
Sbjct: 129 ---KKLAAGAALSRGHYARWLADNGHAVDMPSVFKRYLARGKTGYVPNNWGDMASAIKVI 185

Query: 196 KGADGVILIAHAGDLSRNRRLLSDEQIEALIAE----GLDGLEVWHRGNLPEQRERLLGI 251
             A G+ ++AH          LS + ++ L+ E    G D +EV       + R  L+ +
Sbjct: 186 HNAGGLAVLAHPSGYK-----LSAKWLKRLVREFKEAGGDAMEVVLGQQTVDDRANLVAL 240

Query: 252 CARYHLLVTGGSDWHGKGKPNLLGENL 278
             +  LL + GSD+H       LG+NL
Sbjct: 241 SVQNQLLASIGSDFHFPSNWIELGKNL 267