Pairwise Alignments

Query, 299 a.a., diaminopimelate epimerase from Bifidobacterium breve UCC2003

Subject, 289 a.a., Probable diaminopimelate epimerase DapF (DAP epimerase) from Mycobacterium tuberculosis H37Rv

 Score =  131 bits (329), Expect = 2e-35
 Identities = 103/290 (35%), Positives = 145/290 (50%), Gaps = 16/290 (5%)

Query: 9   KTHATGNDFVVYLDKTGDFEPTADEIRFLCDRHFGIGGDGLIRLTKPEFVSDLSDEQIMA 68
           K H T NDFV+  D   +   TA  +  LCDR  G+G DG++R+T       +     + 
Sbjct: 5   KGHGTQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVGVLDSLP 64

Query: 69  VQAGDAEWFMDYRNADGSLAEMCGNGTRAITLFAQREGVADSTEPFRLGTRAGVKILTPR 128
                 +W+MDYRNADGS A+MCGNG R    + +  G+ +  + F +G+ AG + +T  
Sbjct: 65  EGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASGL-EVRDEFVVGSLAGPRPVTCH 123

Query: 129 GNVKPYGANVFQVEMGEWKIGETDAYEVTIPGNDGSARGTFVDMGNPHVVAVIEDAFSTL 188
            +V+   A+V  V+MG  K     A E  + G      G  VD+GNPH+  V  D+  T+
Sbjct: 124 -HVEAAYADV-SVDMG--KANRLGAGEAVVGGR--RFHGLAVDVGNPHLACV--DSQLTV 175

Query: 189 PVVEDLDLVTKPVVNPTIESDQNVEFVRIDDIDHNTAVGEATMRVNERGCGETLSCGTGL 248
             +  LD V  PV   + +  Q  + V ++ +      G   MRV+ERG GET SCGTG 
Sbjct: 176 DGLAALD-VGAPV---SFDGAQFPDGVNVEVLT-APVDGAVWMRVHERGVGETRSCGTGT 230

Query: 249 CATGIVLRAKTGISHWDITVR--GGTLRVDVTDEDVKLTGSATLVADIDL 296
            A  +   A  G     +TV   GG + V VTD    L G + LVA  DL
Sbjct: 231 VAAAVAALAAVGSPTGTLTVHVPGGEVVVTVTDATSFLRGPSVLVARGDL 280