Pairwise Alignments

Query, 299 a.a., diaminopimelate epimerase from Bifidobacterium breve UCC2003

Subject, 275 a.a., diaminopimelate epimerase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 91.3 bits (225), Expect = 2e-23
 Identities = 93/299 (31%), Positives = 134/299 (44%), Gaps = 46/299 (15%)

Query: 8   TKTHATGNDFVVYLDKTGDFEPTADEIRFLCDRHFGIGGDGLIRLTKPEFVSDLSDEQIM 67
           TK H  GNDF+V    T +   + ++IR L DR+FG+G D L+ L +P +  DL      
Sbjct: 5   TKMHGLGNDFMVVDGITQNVFFSPEQIRRLADRNFGVGFDQLL-LVEPPYDPDLD----- 58

Query: 68  AVQAGDAEWFMDYR--NADGSLAEMCGNGTRAITLFAQREGVADSTEPFRLGTRAGVKIL 125
                       YR  NADG   E CGNG R    F + +G+ +  +  R+ T AG   L
Sbjct: 59  ----------FHYRIFNADGGEVENCGNGARCFARFVRNKGLTNKNK-IRVSTSAGKMTL 107

Query: 126 TPR--GNVK-PYGANVFQVEMGEWKIGETD-AYEVTIPGNDGSARGTFV----DMGNPHV 177
                G V    G  V +     +K  + +  Y +  P      + TF+     MGNPH 
Sbjct: 108 RLERDGTVTVNMGVPVLEPSQIPFKAKKAEKTYLLQTP------QQTFLCGAASMGNPHC 161

Query: 178 VAVIEDAFSTLPVVEDLDLVTKPVVNPTIESDQNVEFVRIDDIDHNTAVGEATMRVNERG 237
           V  +ED  +   V E   L+TK   +       NV F+++         G   +RV ERG
Sbjct: 162 VLDVEDV-ANANVAEIGALLTK---HERFPRGVNVGFMQV------VNAGHIKLRVYERG 211

Query: 238 CGETLSCGTGLCATGIVLRAKTGISHW-DITVRGGTLRVDVTDEDVKL--TGSATLVAD 293
             ETL+CGTG CA  +V + +  +     + + GG+L ++   E   L  TG A  V D
Sbjct: 212 AAETLACGTGACAAVVVGQIQGKLDQQVQVDLPGGSLTINWEGEGKPLWMTGPAQHVYD 270