Pairwise Alignments

Query, 299 a.a., diaminopimelate epimerase from Bifidobacterium breve UCC2003

Subject, 282 a.a., diaminopimelate epimerase (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 83.6 bits (205), Expect = 5e-21
 Identities = 93/296 (31%), Positives = 123/296 (41%), Gaps = 53/296 (17%)

Query: 9   KTHATGNDFVVYLDKTG---DFEPTADEIRFLCDRHFGIGGDGLIRLTKPEFVSDLSDEQ 65
           K H  GNDFV ++D        E   D  R +C R FG+G DGL+ L             
Sbjct: 12  KLHGCGNDFV-FIDNRHLKLSVEAMPDWARSICRRAFGVGADGLVFLDT----------- 59

Query: 66  IMAVQAGDAEWFMDYRNADGSLAEMCGNGTRAITLFAQREGVADSTEPFRLGTRAGVKIL 125
             A Q  +A++   + NADGS AEMCGN +R   + A   G A     F  GT AG+   
Sbjct: 60  --APQGHEADYIWHFYNADGSRAEMCGNASRCAAVLAVDLGFAGPRHAF--GTDAGIV-- 113

Query: 126 TPRGNVKPYGANVFQVEMGEWKIGETDAYEVTIPGNDGSARGT-----FVDMGNPHVVAV 180
                       V  VE G  K+  T   ++   G      GT     FV+ G PH V V
Sbjct: 114 ----------HAVADVEAGYAKVELTRPRDLA-AGTTLELEGTPFTVHFVNTGVPHAV-V 161

Query: 181 IEDAFSTLPVVE-DLDLVTKPVVNPTIESDQNVEFVRIDDIDHNTAVGEATMRVNERGC- 238
             D+   L +      L   P  +P   +  N  F  I  ID  T      +R  ERG  
Sbjct: 162 FSDSVDGLDLRRLGAALRYHPHFSP---AGTNANFASI--IDRRT----IHLRTYERGVE 212

Query: 239 GETLSCGTGLCATGIVLRAKTGISHWDITVR---GGTLRVDVTDEDVKLTGSATLV 291
            ET +CGTG  AT  +     G++   + VR   G  L +D+ D  + L+G A  V
Sbjct: 213 DETYACGTGAAATAFIAHT-LGLTDASVGVRTSGGEVLGIDIEDGSIFLSGKAVRV 267