Pairwise Alignments

Query, 299 a.a., diaminopimelate epimerase from Bifidobacterium breve UCC2003

Subject, 288 a.a., diaminopimelate epimerase from Caulobacter crescentus NA1000

 Score = 93.6 bits (231), Expect = 5e-24
 Identities = 94/304 (30%), Positives = 139/304 (45%), Gaps = 56/304 (18%)

Query: 9   KTHATGNDFVVYLDKTGDFEPTADEIRFLCDRHFGIGGDGLIRLTKPEFVSDLSDEQIMA 68
           K +  GNDFVV    T  F+PT ++IR +  R  G+ G G            +  +Q++A
Sbjct: 7   KMNGLGNDFVVIQTLTEAFDPTPEQIRAIAKRP-GVDGKG-----------GIGCDQVIA 54

Query: 69  V---QAGDAEWFMDYRNADGSLAEMCGNGTRAITLF----AQREGVADSTEPFRL-GTRA 120
           +   +A  A  ++ + N+DG +A  CGNGTR +       A ++ VA  T   RL G  A
Sbjct: 55  IDPPRAEGASAYVRFWNSDGEVAGACGNGTRCVAWLLMQSAGKDAVAFDTVAGRLSGVAA 114

Query: 121 GVKILTPRGNVKPYGANVFQV--------EMGEWKIGETDAYEVTIPGNDGSARGTFVDM 172
           G K++T   ++ P G +  Q+        E  E ++G  DA  V  P          V M
Sbjct: 115 GDKLVTV--DMGPPGLDWTQIPLAEEMNTERVELQVGPIDAPLVHTP--------VCVSM 164

Query: 173 GNPHVVAVIEDAFSTLPVVEDLDLVTKPVV--NPTIESDQNVEFVRIDDIDHNTAVGEAT 230
           GNPHVV  ++      PV +D    T  +V  +P      NV F  I   DH        
Sbjct: 165 GNPHVVFFVD-----APVTDDFARGTGSLVEHHPLFPEGVNVGFAHIASRDH------IR 213

Query: 231 MRVNERGCGETLSCGTGLCATGIVLRAKTGISHWDITVR--GGTLRVDVTDED--VKLTG 286
           ++V ERG G T +CGTG CA   V   + G++     V    G+L ++  + D  V +TG
Sbjct: 214 LKVWERGAGLTQACGTGACAAQ-VAAVRRGLTDRKARVEFDTGSLTIEWRESDGHVIMTG 272

Query: 287 SATL 290
             T+
Sbjct: 273 PITM 276