Pairwise Alignments

Query, 407 a.a., carbamoyl-phosphate synthase small subunit from Bifidobacterium breve UCC2003

Subject, 375 a.a., carbamoyl-phosphate synthase, small subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  277 bits (708), Expect = 4e-79
 Identities = 167/393 (42%), Positives = 224/393 (56%), Gaps = 36/393 (9%)

Query: 19  AVLVLEDGQVYVGEPYGALGETTGEIVFATGMTGYQETLTDPSYDRQIVVQTFPHIGDTG 78
           A+L LEDG V  G  +   GET GE +F TGMTGYQE LTDPSY  Q+V  T+P +G+ G
Sbjct: 3   ALLALEDGFVLEGRSFTGPGETGGEAIFNTGMTGYQEVLTDPSYAGQMVCMTYPLVGNYG 62

Query: 79  VNSEDPESSRIWVAGYIVRDPSPNVSNWRAEGSLDDDLVKNGIVGLSHIDTRKLVRHLRS 138
           V  ED ES ++ V  +IV++     SNWR+E SL D L ++G++G+  IDTR L RHLR 
Sbjct: 63  VTREDMESGKVHVEAFIVKECCKVPSNWRSEISLPDYLKRHGVMGIEGIDTRALTRHLRI 122

Query: 139 AGVMRAGIFSGEALVDAATGKLKTIEQLLEDVKNTPPMQGLSLYDEVSTKETY------- 191
            G MR  I + E   D A        +L+E  +  P M+G +L   V+    Y       
Sbjct: 123 HGAMRGVISTQE--TDPA--------RLVERARALPSMEGQNLVTRVAPAAPYRWDGERP 172

Query: 192 ---TIEPCG-EYEGKEPLYTVAAVDLGIKGMTPHRMAERGCRVHVVPSTITFAELEALNP 247
              T+EP G  + GK P   V   D GIK      +A++G  + VVP +   A++ A+  
Sbjct: 173 QAVTLEPGGCAWVGKGPRLVV--YDFGIKWNILRLLAQQGFDMLVVPPSFKAADVAAVGA 230

Query: 248 DGVFFSNGPGDPEQAGPEIELLRQVLDAGYPFFGICFGNQLLGRALGFGTYKLKFGHRGI 307
             VF SNGPGDP     EI  + ++    YP  GIC G+QLLG ALG  T KLKFGH G 
Sbjct: 231 QAVFLSNGPGDPATLKDEIAEIAKLAQT-YPTAGICLGHQLLGHALGGRTMKLKFGHHGC 289

Query: 308 NQPVKDLTTGKVEVTAHNHGFAVDAPIGKQVDAPFENGKYGKVFVSHIDLNDDVVEGLQC 367
           N PVKDLTTG++E+++ NHGF VD  I    D          V ++H++LND  +EG   
Sbjct: 290 NHPVKDLTTGRIEISSQNHGFCVD--IDSLTD----------VEITHVNLNDGTLEGFAH 337

Query: 368 VDIPAFSVQYHPEAAAGPHDAAYLFDRFCELMK 400
              P  +VQ+HPEA+ GP+D+ Y F RF  +++
Sbjct: 338 KTKPVIAVQHHPEASPGPNDSRYFFARFRNMVR 370