Pairwise Alignments

Query, 834 a.a., excinuclease ABC subunit A from Bifidobacterium breve UCC2003

Subject, 946 a.a., excinuclease ABC, ATPase subunit (A) from Marinobacter adhaerens HP15

 Score =  401 bits (1031), Expect = e-116
 Identities = 247/742 (33%), Positives = 386/742 (52%), Gaps = 32/742 (4%)

Query: 100 IRSTFGTMTELLNSLRLLFSRVASHVCPHCGARNESTLNVAAGLPITCAGCGKEFHAPGA 159
           +  +F T  +L + + L        V P  G   E T +        C  CG        
Sbjct: 217 LAESFETALDLADGIAL--------VAPMSGEGEEQTFSAR----YACTQCGYALSELEP 264

Query: 160 ESLAFNS-AGACPTCSGTGIVREVNRAALVPDESKSIDDGAVLPWGS---LMWDLMKQVC 215
           +  +FN+ AGACPTC G G+ +  +   +V     ++  GA+  W       + ++  V 
Sbjct: 265 KLFSFNNPAGACPTCDGLGVKQFFDPEKIVQHPEATLASGAIKGWDRRAVYYFQMLGSVA 324

Query: 216 GAMGVRTNVPFSELTPEERDIVFNGPAIKKHILYKPKKGDDFAELDFTYFNAVYTVENAL 275
              G+    P+++L  + R+++  G   +              E    +   +  +E   
Sbjct: 325 DHYGIDLETPWADLPEDFRNVLLFGSGDEDIPFRYVNSRGHIMEKAHPFEGILPNLERRY 384

Query: 276 AKAKDEKGLKRVARFLKEGPCADCGGTRLSAAARAPHVRGLNLAEASAMTLDTAVDWVRG 335
            +   +   + +AR L   PC +CGG+RL  +AR   +   N+++ + + +  A D+   
Sbjct: 385 RETDSQSMREELARNLSTQPCKECGGSRLRRSARHVFIEEHNISDVTHLPVGDAHDYFET 444

Query: 336 VPESLPADMRPMATNICESFLNVARRLLDLGLGYLALDRAGATLSTGERQRVQLARAVRN 395
           +  +LP     +A  I +      + L+++GL YL L+R+  TLS GE QR++LA  +  
Sbjct: 445 L--ALPGRKGEIAEKILKEVRQRLQFLVNVGLEYLTLERSADTLSGGEAQRIRLASQIGA 502

Query: 396 RTTGVLYVLDEPSIGLHPSNVDGLLGVMRDLVADGNSVVVVDHDVRVLKAAGHLIEMGPV 455
              GV+Y+LDEPSIGLH  + D LL  +  L   GN+V+VV+HD   ++AA H+I++GP 
Sbjct: 503 GLVGVMYILDEPSIGLHQRDNDRLLATLTHLRDLGNTVIVVEHDEDAIRAADHVIDIGPG 562

Query: 456 AGAEGGHVIAQGTVDEVAANPSSRIAPFLADNVSARIRERVAESQVFDLGHIRMTTSQLH 515
           AG  GG VI QGT  ++  NP S    +L       I ++  +     L    ++ +  +
Sbjct: 563 AGVHGGKVIGQGTPQQIIDNPDSLTGQYLNGTREIAIPKQRNKGSGKTL---TLSGATGN 619

Query: 516 TVKPLDVDIPRGRLVAVTGVSGSGKTTMVLESLIPALKAQAVGERLPEHVRELEAEGIHR 575
            +K + +D+P G +  VTGVSGSGK+T++  +L P   A+        H      +G+  
Sbjct: 620 NLKDVTLDLPLGIMTCVTGVSGSGKSTLINSTLYPVAAAKLNKATSLNHAPYQSLKGLDH 679

Query: 576 ANL---IDATPIGANVRSTVATYADIHDELRRAFARCDAAKTGGWKAGDFSYNTGRLRCP 632
            +    ID +PIG   RS  ATY  +   +R  FA    A++ G+K G FS+N    RC 
Sbjct: 680 LDKVIDIDQSPIGRTPRSNPATYTGLFTPIRELFAGTQEARSRGYKPGRFSFNVKGGRCE 739

Query: 633 TCDGTGSISLDVQFLPDVTIECPDCGGSRYASEAGAIRRAVKGESHLSLSLPQLMAMSVD 692
            C G G I +++ FLPD+ + C  C G RY  E   +R   KG+     ++ +++ M+V+
Sbjct: 740 ACQGDGVIKVEMHFLPDIYVPCDVCKGKRYNRETLEVR--YKGK-----NINEVLEMTVE 792

Query: 693 QALAVTHDLKKVHARLTTLHDLGLGYLTLGEPTPALSGGEAQRLKLASEMGKAQS-DAVF 751
           +       +  +  +L TL D+GL Y+ LG+    LSGGEAQR+KLA E+ K  +   ++
Sbjct: 793 EGREFFDAVPFLARKLQTLMDVGLSYIRLGQSAVTLSGGEAQRVKLAKELSKRDTGKTLY 852

Query: 752 VFDEPTIGLHPLDVRVLLGVFDRLVASGATVVVIEHDLDVIANADWIIDMGPGGGESGGR 811
           + DEPT GLH  D++ LL V +RL   G T+VVIEH+LDVI  ADWI+D+GP GG  GG+
Sbjct: 853 ILDEPTTGLHFYDIQQLLNVLERLRDHGNTIVVIEHNLDVIKTADWIVDLGPEGGSGGGQ 912

Query: 812 IVATGTPEQVAANPSSITGRYL 833
           I+A GTPE+VA NP+S TGRYL
Sbjct: 913 IIAEGTPEEVAENPASHTGRYL 934



 Score =  123 bits (308), Expect = 6e-32
 Identities = 60/121 (49%), Positives = 84/121 (69%)

Query: 10  IEVRGARVHNLKNIDIDIPLGELVGVAGVSGSGKSSLALGVLYAEGSRRYLEALSTYTRR 69
           I+++GAR HNLKNID+D+P  +L+ + G+SGSGKSSLA   LYAEG RRY+E+LSTY R+
Sbjct: 4   IQIKGARTHNLKNIDLDMPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSTYARQ 63

Query: 70  RLTQASRAQVDEVLHVPAALALHQRPTVPGIRSTFGTMTELLNSLRLLFSRVASHVCPHC 129
            L+   +  VD +  +  A+++ Q+ T    RST GT+TE+ + LRLLF+R     CP  
Sbjct: 64  FLSMMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLFARAGEPRCPDH 123

Query: 130 G 130
           G
Sbjct: 124 G 124



 Score = 65.1 bits (157), Expect = 2e-14
 Identities = 38/115 (33%), Positives = 64/115 (55%), Gaps = 11/115 (9%)

Query: 504 LGHIRMTTSQLHTVKPLDVDIPRGRLVAVTGVSGSGKTTMVLESLIPALKAQAVGERLPE 563
           + HI++  ++ H +K +D+D+PR +L+ +TG+SGSGK+++  ++L    + + V E L  
Sbjct: 1   MDHIQIKGARTHNLKNIDLDMPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYV-ESLST 59

Query: 564 HVREL----------EAEGIHRANLIDATPIGANVRSTVATYADIHDELRRAFAR 608
           + R+             EG+  A  I+      N RSTV T  +I+D LR  FAR
Sbjct: 60  YARQFLSMMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLFAR 114



 Score = 54.3 bits (129), Expect = 3e-11
 Identities = 47/174 (27%), Positives = 73/174 (41%), Gaps = 35/174 (20%)

Query: 8   QAIEVRGARVHNLKNIDIDIPLGELVGVAGVSGSGKSSLALGVLYAEGSRRYLEALSTYT 67
           + + + GA  +NLK++ +D+PLG +  V GVSGSGKS+L    LY   + +  +A S   
Sbjct: 609 KTLTLSGATGNNLKDVTLDLPLGIMTCVTGVSGSGKSTLINSTLYPVAAAKLNKATS--- 665

Query: 68  RRRLTQASRAQVDEVLHVPAALALHQRPTVPGIRSTFGTMTELLNSLRLLFSRVASHVCP 127
              L  A    +  + H+   + + Q P     RS   T T L   +R LF+        
Sbjct: 666 ---LNHAPYQSLKGLDHLDKVIDIDQSPIGRTPRSNPATYTGLFTPIRELFAGTQE---- 718

Query: 128 HCGARNESTLNVAAGLPITCAGCGKEFHAPGAESLAFN-SAGACPTCSGTGIVR 180
              AR+                     + PG    +FN   G C  C G G+++
Sbjct: 719 ---ARSRG-------------------YKPG--RFSFNVKGGRCEACQGDGVIK 748