Pairwise Alignments
Query, 834 a.a., excinuclease ABC subunit A from Bifidobacterium breve UCC2003
Subject, 968 a.a., excinuclease ABC subunit A from Caulobacter crescentus NA1000
Score = 397 bits (1021), Expect = e-114
Identities = 244/680 (35%), Positives = 354/680 (52%), Gaps = 25/680 (3%)
Query: 165 NSAGACPTCSGTGIVREVNRAALVPDESKSIDDGAVLPWGSLMWDLMKQVCGAM----GV 220
N AGACP C G G + ++PD+ +++ GAV PW L Q A+ G
Sbjct: 280 NPAGACPVCDGLGAKLAFDADLVIPDKDRTLHGGAVAPWAKGPSPLYTQTLQALARHYGF 339
Query: 221 RTNVPFSELTPEERDIVFNGP-AIKKHILYKPKKGDDFA---ELDFTYFNAVYTVENALA 276
+ P+ +L+ E RD+V NG K +Y DD A E++ + + +E
Sbjct: 340 SMDEPWHKLSTEARDVVLNGSKGAKIKFVY-----DDNARKYEVEKPFEGVLPNLERRWR 394
Query: 277 KAKDEKGLKRVARFLKEGPCADCGGTRLSAAARAPHVRGLNLAEASAMTLDTAVDWVRGV 336
+ + + RF + PC C G RL A A V G+++AE S M + A DW G+
Sbjct: 395 ETDSSWVREELGRFQSDTPCESCHGKRLKPEALAVKVSGMDIAEVSMMAIRPARDWFAGL 454
Query: 337 PESLPADMRPMATNICESFLNVARRLLDLGLGYLALDRAGATLSTGERQRVQLARAVRNR 396
L +A I + + R L+D+GL YL + R TLS GE QR++LA + +
Sbjct: 455 EGKLSDKQMEIARRILKEINDRLRFLVDVGLDYLNMSRGSGTLSGGESQRIRLASQIGSG 514
Query: 397 TTGVLYVLDEPSIGLHPSNVDGLLGVMRDLVADGNSVVVVDHDVRVLKAAGHLIEMGPVA 456
TGVLYVLDEPSIGLH + LL ++ L GNSV+VV+HD + A ++I+MGP A
Sbjct: 515 LTGVLYVLDEPSIGLHQRDNTRLLTSLQGLRDLGNSVLVVEHDEEAILTADYVIDMGPAA 574
Query: 457 GAEGGHVIAQGTVDEVAANPSSRIAPFLADNVSARIRERVAESQVFDLGHIRMTTSQLHT 516
G GG ++AQG ++ ANP S +L + E+ + +R+ + +
Sbjct: 575 GVHGGEIVAQGKPADIMANPKSLTGQYLTGAREIEVPEQ--RRPISKKKMLRVVGATGNN 632
Query: 517 VKPLDVDIPRGRLVAVTGVSGSGKTTMVLESLIPAL--KAQAVGERLPEHVRELEAEGIH 574
+K + +IP G +TGVSG GK+T +E+L A + + H R E
Sbjct: 633 LKGVTAEIPVGTFTCITGVSGGGKSTFTIETLYKAAARRLNNASDAPAPHERIEGLEHFD 692
Query: 575 RANLIDATPIGANVRSTVATYADIHDELRRAFARCDAAKTGGWKAGDFSYNTGRLRCPTC 634
+ ID +PIG RS ATY +R FA +K G+ G FS+N RC C
Sbjct: 693 KVIDIDQSPIGRTPRSNPATYTGAFGPIRDWFAGLPESKARGYGPGRFSFNVKGGRCEAC 752
Query: 635 DGTGSISLDVQFLPDVTIECPDCGGSRYASEAGAIRRAVKGESHLSLSLPQLMAMSVDQA 694
G G I +++ FLPDV + C C G RY E + KG+ ++ ++ M+V++A
Sbjct: 753 QGDGVIKIEMHFLPDVYVTCDICKGKRYNRE--TLDVVFKGK-----TIADVLDMTVEEA 805
Query: 695 LAVTHDLKKVHARLTTLHDLGLGYLTLGEPTPALSGGEAQRLKLASEMGK-AQSDAVFVF 753
+ + ++ TL +GL Y+ +G+ LSGGEAQR+KL+ E+ K A +++
Sbjct: 806 ADFFKAVPPIRDKMETLKRVGLSYIKVGQQATTLSGGEAQRVKLSKELSKRATGRTLYIL 865
Query: 754 DEPTIGLHPLDVRVLLGVFDRLVASGATVVVIEHDLDVIANADWIIDMGPGGGESGGRIV 813
DEPT GLH D + LL V L G TVVVIEH+LDV+ ADW++D GP GG+ GG IV
Sbjct: 866 DEPTTGLHFEDTKKLLEVLHELADQGNTVVVIEHNLDVVKTADWLLDFGPEGGDGGGEIV 925
Query: 814 ATGTPEQVAANPSSITGRYL 833
A G+P+ VA +S TGRYL
Sbjct: 926 AVGSPQDVAKVEASWTGRYL 945
Score = 115 bits (289), Expect = 9e-30
Identities = 62/126 (49%), Positives = 84/126 (66%)
Query: 10 IEVRGARVHNLKNIDIDIPLGELVGVAGVSGSGKSSLALGVLYAEGSRRYLEALSTYTRR 69
I VRGAR HNLK++ +DIP GELV + G+SGSGKSSLA +YAEG RRY+E+LS Y R+
Sbjct: 8 IRVRGAREHNLKDVSVDIPRGELVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQ 67
Query: 70 RLTQASRAQVDEVLHVPAALALHQRPTVPGIRSTFGTMTELLNSLRLLFSRVASHVCPHC 129
L S+ VD + + A+++ Q+ T RST GT+TE+ + +RLL++RV P
Sbjct: 68 FLELMSKPDVDLIEGLSPAISIEQKTTSRNPRSTVGTVTEIHDYMRLLWARVGIPYSPAT 127
Query: 130 GARNES 135
G ES
Sbjct: 128 GLPIES 133
Score = 106 bits (264), Expect = 7e-27
Identities = 69/206 (33%), Positives = 107/206 (51%), Gaps = 20/206 (9%)
Query: 296 CADCGGTRLSAAARAPHVRGLNLAEASAMTLDTAVDWVRGVPESLPADMRPMATNICESF 355
C C G R + +G +A+ MT++ A D+ + VP P+ +
Sbjct: 772 CDICKGKRYNRETLDVVFKGKTIADVLDMTVEEAADFFKAVP--------PIRDKM---- 819
Query: 356 LNVARRLLDLGLGYLALDRAGATLSTGERQRVQLARAVRNRTTG-VLYVLDEPSIGLHPS 414
L +GL Y+ + + TLS GE QRV+L++ + R TG LY+LDEP+ GLH
Sbjct: 820 ----ETLKRVGLSYIKVGQQATTLSGGEAQRVKLSKELSKRATGRTLYILDEPTTGLHFE 875
Query: 415 NVDGLLGVMRDLVADGNSVVVVDHDVRVLKAAGHLIEMGPVAGAEGGHVIAQGTVDEVA- 473
+ LL V+ +L GN+VVV++H++ V+K A L++ GP G GG ++A G+ +VA
Sbjct: 876 DTKKLLEVLHELADQGNTVVVIEHNLDVVKTADWLLDFGPEGGDGGGEIVAVGSPQDVAK 935
Query: 474 --ANPSSRIAPFLADNVSARIRERVA 497
A+ + R L D R + RVA
Sbjct: 936 VEASWTGRYLKELLDRHEERRKARVA 961
Score = 63.5 bits (153), Expect = 5e-14
Identities = 42/115 (36%), Positives = 64/115 (55%), Gaps = 11/115 (9%)
Query: 504 LGHIRMTTSQLHTVKPLDVDIPRGRLVAVTGVSGSGKTTMVLESLIPALKAQAVGERLPE 563
L IR+ ++ H +K + VDIPRG LV +TG+SGSGK+++ +++ + + V E L
Sbjct: 5 LNFIRVRGAREHNLKDVSVDIPRGELVVLTGLSGSGKSSLAFDTIYAEGQRRYV-ESLSA 63
Query: 564 HVRE-LE---------AEGIHRANLIDATPIGANVRSTVATYADIHDELRRAFAR 608
+ R+ LE EG+ A I+ N RSTV T +IHD +R +AR
Sbjct: 64 YARQFLELMSKPDVDLIEGLSPAISIEQKTTSRNPRSTVGTVTEIHDYMRLLWAR 118
Score = 50.8 bits (120), Expect = 4e-10
Identities = 45/176 (25%), Positives = 69/176 (39%), Gaps = 36/176 (20%)
Query: 6 RPQAIEVRGARVHNLKNIDIDIPLGELVGVAGVSGSGKSSLALGVLYAEGSRRYLEALST 65
+ + + V GA +NLK + +IP+G + GVSG GKS+ + LY +RR A
Sbjct: 619 KKKMLRVVGATGNNLKGVTAEIPVGTFTCITGVSGGGKSTFTIETLYKAAARRLNNASD- 677
Query: 66 YTRRRLTQASRAQVDEVLHVPAALALHQRPTVPGIRSTFGTMTELLNSLRLLFSRVASHV 125
A +++ + H + + Q P RS T T +R F
Sbjct: 678 ------APAPHERIEGLEHFDKVIDIDQSPIGRTPRSNPATYTGAFGPIRDWF------- 724
Query: 126 CPHCGARNESTLNVAAGLPITCAGCGKEFHAPGAESLAFN-SAGACPTCSGTGIVR 180
AGLP + A + PG +FN G C C G G+++
Sbjct: 725 ---------------AGLPESKA----RGYGPG--RFSFNVKGGRCEACQGDGVIK 759
Score = 26.9 bits (58), Expect = 0.006
Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 8/67 (11%)
Query: 622 FSYNTGRLRCPTCDGTGSISLDVQFLPDVTIECPDCGGSRYASEAGAIRRAVKGESHLSL 681
FS+N CP CDG G+ + F D+ I D GA+ KG S L
Sbjct: 276 FSFNNPAGACPVCDGLGA---KLAFDADLVIPDKD-----RTLHGGAVAPWAKGPSPLYT 327
Query: 682 SLPQLMA 688
Q +A
Sbjct: 328 QTLQALA 334