Pairwise Alignments

Query, 285 a.a., ribonuclease HII from Bifidobacterium breve UCC2003

Subject, 206 a.a., ribonuclease HII from Vibrio cholerae E7946 ATCC 55056

 Score = 76.3 bits (186), Expect = 5e-19
 Identities = 76/279 (27%), Positives = 110/279 (39%), Gaps = 87/279 (31%)

Query: 4   PTLDLERSLASQDYDLIVGFDEVGRGALAGPVMVGCAAIWARDLKPDADGELAQADGSAA 63
           P+++L        Y LI G DEVGRG L G V+                           
Sbjct: 5   PSIELPPFEIPAGYALIAGVDEVGRGPLVGDVVT-------------------------- 38

Query: 64  SSRVSGDNGTDAGVITPDPAPYLSVPAGVADSKMLTEHRREAIFDELCSWCAAYAVGQAS 123
                      A VI     P +    G+ DSK L+E +R A+F E+     A+AVG+ S
Sbjct: 39  -----------AAVILDPNRPIM----GLNDSKKLSEKKRLALFPEIQVKALAWAVGRCS 83

Query: 124 NAEIDEWGITYALGVAALRALNQVERDLGVGSEFGSPREGSCLTATEGKPLPSRRPITIG 183
             EIDE  I  A  VA  RA+  +             R    L   +G  +P        
Sbjct: 84  PQEIDELNIFQATMVAMQRAVAGL-------------RIQPDLVLIDGNKIPK------- 123

Query: 184 AILDGPSDYITKALNTFDAPDVPIPADVTTKVKGDQHCATVATAAVIAKVTRDRLMVSIA 243
                                  +P +    VKGD   A ++ A++IAKV RD+ M ++ 
Sbjct: 124 -----------------------LPMEAQAVVKGDLRVAQISAASIIAKVIRDQEMEAL- 159

Query: 244 QGNPRYAAYEWDHNKGYGSAAHRAAIAEYGPTPLHRTSW 282
             + +Y  + +  +KGY +AAH AAI ++G    HR S+
Sbjct: 160 --DKQYPQFGFAKHKGYPTAAHFAAIEQHGVIEQHRKSF 196