Pairwise Alignments

Query, 285 a.a., ribonuclease HII from Bifidobacterium breve UCC2003

Subject, 209 a.a., ribonuclease HII (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 84.3 bits (207), Expect = 2e-21
 Identities = 81/274 (29%), Positives = 114/274 (41%), Gaps = 82/274 (29%)

Query: 9   ERSLASQDYDLIVGFDEVGRGALAGPVMVGCAAIWARDLKPDADGELAQADGSAASSRVS 68
           +  +A     L+ G DEVGRG L G V+                                
Sbjct: 9   DADIAMFSTSLVAGVDEVGRGPLVGDVVT------------------------------- 37

Query: 69  GDNGTDAGVITPDPAPYLSVPAGVADSKMLTEHRREAIFDELCSWCAAYAVGQASNAEID 128
                 A VI     P L    G+ DSK LTE RREA+FDE+C    ++ VG+AS AEID
Sbjct: 38  ------AAVILDPNRPIL----GLNDSKKLTEKRREALFDEICEKALSFHVGRASPAEID 87

Query: 129 EWGITYALGVAALRALNQVERDLGVGSEFGSPREGSCLTATEGKPLPSRRPITIGAILDG 188
           E  I +A  +A  RA++ ++                 L   +G    +R P      L  
Sbjct: 88  ELNILHATMLAMQRAVSGLKLT-------------PALVLVDG----NRSPAFTHQGLSL 130

Query: 189 PSDYITKALNTFDAPDVPIPADVTTKVKGDQHCATVATAAVIAKVTRDRLMVSIAQGNPR 248
            S  I                     +KGD   A+++ A++IAKVTRDR M ++    P+
Sbjct: 131 ASHSI---------------------IKGDGLIASISAASIIAKVTRDREMDALDAAYPQ 169

Query: 249 YAAYEWDHNKGYGSAAHRAAIAEYGPTPLHRTSW 282
           Y    +  +KGY + AH  AIAE+G    +R S+
Sbjct: 170 YG---FAKHKGYPTKAHFEAIAEHGVFDQYRKSF 200