Pairwise Alignments

Query, 350 a.a., LacI family transcriptional regulator from Bifidobacterium breve UCC2003

Subject, 332 a.a., periplasmic binding protein/LacI transcriptional regulator (RefSeq) from Shewanella amazonensis SB2B

 Score =  115 bits (288), Expect = 2e-30
 Identities = 89/296 (30%), Positives = 145/296 (48%), Gaps = 15/296 (5%)

Query: 1   MVGMRDVAKTAGVSLSTVSLVVNNTGYVSDDMRAKVEAAMRQLNYIPNELARNLYRNRTN 60
           M  + DV+  AGVSL+TVS VVNNTG VSD  R KV  AM +L+Y PN +A++L  NR+N
Sbjct: 1   MATIYDVSFLAGVSLATVSRVVNNTGKVSDKTRQKVHDAMAKLDYRPNTIAQSLASNRSN 60

Query: 61  TIGVIMPTIAHPFFATLTAHLQREFAARDLKTLLCSIADADKGEGEYVDMLQRHMMDGIV 120
           +IGV++  +  PF+  +   ++    A +   ++ +       E + V+ L     D ++
Sbjct: 61  SIGVLVSQLDGPFYGPMMREVESALRAANKHVIIAAGHSDAAQEKDGVEFLLSRGCDALI 120

Query: 121 MAAHTEHPGGYWTSI---HRPIVAFDRTL-GEGVPAVRSDHEQGGRLIARQLIDSGARHV 176
           + A      GY   +     P+V  +R + G     V  ++ QGG L +R +++ G + +
Sbjct: 121 VDAEI-LSNGYLVELCQGKTPVVLINRHVDGIDERCVHLNNLQGGLLASRHVLEKGHKQI 179

Query: 177 VLVGGPRSQFAEATTFPTIRYHLTVERMLADAGIACD--YVEAGIVADICAHEATARAIF 234
             + GP  +          R      + LA+ GIA D      G   +   +EA A+ + 
Sbjct: 180 AYISGPLFKLDARERLEGHR------QALAEQGIAFDENLFYEGDFREEGGYEAMAQ-LL 232

Query: 235 ERYSDVDAIV-GSDLVASVALQEALRRGISVPRDLQIIAYDGTFMAETAGMRLTAV 289
            R  D  A+V  +D +AS A+ + L RG+ VP D+  + +D          +LT V
Sbjct: 233 SRGRDFTAVVCANDQMASGAIAQCLERGLRVPEDISFVGFDNIPFPRYISPKLTTV 288