Pairwise Alignments

Query, 539 a.a., amidohydrolase from Bifidobacterium breve UCC2003

Subject, 563 a.a., urease domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 96.3 bits (238), Expect = 3e-24
 Identities = 141/570 (24%), Positives = 223/570 (39%), Gaps = 97/570 (17%)

Query: 26  LRDGIVASVNLAGTDLASHGAMPAGAHAAFSAHTSNAADTGSTPTPTPAAAPADETTINA 85
           L D ++ + N+ G + A+  A+  G    +     NA +  S  T            I+ 
Sbjct: 30  LADTLLTNTNIYGHNNATSLAIKDGK-IVYIGDEQNAMNHVSNKTQV----------IDL 78

Query: 86  DGLWIIPGLWDCHTHFTQWAKTLGRLDLINARSAAEAMDMLHRHLDERRAAGTLDPDAFV 145
            G +++PG  D H H  + A  +G   L++     E  D+       R     L+   ++
Sbjct: 79  KGGYLLPGFVDNHNHVFEAASEIGSDCLLD-----EDKDINGYIRSLRACKEELEEGEWL 133

Query: 146 VGMRFRHS-LWADDEQPTLAAIDAVTGDQPVALSSADMHCGWVNSAA------------- 191
           +G     S L  D++   LA +D +  + PV +     H  WVNS A             
Sbjct: 134 LGYGHELSQLMQDNDTSPLAILDEIFPNNPVIIMEQTSHSMWVNSLALAEAGITIHSKEP 193

Query: 192 -----------ARRLGVHVDESG-LVGELEWFNAYTAFDKAPGAAEETDRLLREAEQDAA 239
                       + LG+ +D +G L+ E  W N        P  AE   + L      A+
Sbjct: 194 QGGKILKDKTTGKLLGILLDNAGDLLMEQAWKN-------QPNLAEANYQGLLNGLAQAS 246

Query: 240 SKGVVGIRD---YEMAENIDTWIKRFKAGVNNLRVD--AGVYPERLQAAIDAGWHTGREL 294
             G+  I D   Y     ++TW+   K      RV     VYP   +A     +    + 
Sbjct: 247 KHGITTIGDGRLYWKRGWLETWLTAEKNQALTARVSLRPWVYPAD-EANEQLAFFKKIKS 305

Query: 295 PDSNGLGRVGAMKLISDGSLNTRSAYCSTPYS-GIEPPTYGTMSYAP-QQIEDYMRLATE 352
            D   L ++  +K+ SDG +   +A    PY     P     + Y P  ++  ++    +
Sbjct: 306 NDKQRLIQINQVKIYSDGIIINGTASTLDPYDWSYTPQIPHGLEYIPATKMAWWLSELNK 365

Query: 353 HGFDIACHAIGDEANTIVLNAAAATHAHG-----SIEHAQMLKPVDIPRFAELGLTASIQ 407
            G+    HAIGD      LNA     A G     S+ H +M+   DI RFA L + A  Q
Sbjct: 366 IGYGAHIHAIGDAGVRNTLNAIETLRAQGATTAYSMTHLEMVSAQDIKRFAPLRVDADFQ 425

Query: 408 ---PQHAMDDRDVITRFWANP------AGIPYPFNALHDAGAMLRMGSDAPVAPLDPWLA 458
                 A  D D     WA P      A    P NA+ + GA + + SD  V  ++P + 
Sbjct: 426 LGSDYIAEQDHD-----WAIPFIGKQRAHALLPINAILNTGANVTLSSDWNVNDINPLVG 480

Query: 459 ISAAVFGTESSDREPFQPEQCLDVRTSLAAST-----AMGRDH----LAVGDPADVVLLD 509
           I+ AV+          +     D+  ++AA T     A+G D     L VG  AD+V+L+
Sbjct: 481 IANAVY---------LKNMGIADIHQAIAAYTINPAQALGLDDITGTLEVGKSADIVMLE 531

Query: 510 TDPYFVSAPEAMRAMSEHVVMTLLRGERMY 539
            D   ++     +  +  V+MT L GE +Y
Sbjct: 532 RD---ITQSTPKQIANTRVLMTWLEGEVVY 558