Pairwise Alignments

Query, 751 a.a., GGDEF domain-containing protein from Bifidobacterium breve UCC2003

Subject, 1491 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  157 bits (398), Expect = 3e-42
 Identities = 90/247 (36%), Positives = 136/247 (55%), Gaps = 2/247 (0%)

Query: 21   DIDHALENGEFGCYLQPKCNAETGT-IVGAEALVRWNHPKYGVIPPGWFVPVLERAGRIC 79
            D+  A+E  EF  Y QP+ +   G   +G EAL+RW HP  G + P  F+ V E  G + 
Sbjct: 1235 DLRKAIERQEFELYYQPQIDILRGDKFIGMEALIRWQHPVDGFVRPDIFIKVAEACGLVV 1294

Query: 80   HVDVFVWRFVAEMLGRWEREGRNLVPVSVNVSMMDINQMDVADVIGGLLNEYNIDARLLQ 139
             +D +V R       RW ++      +SVN+S +   Q D  D +  +L+  ++ A  L 
Sbjct: 1295 DIDRWVLRCACLDGARWAKQTIEPFKMSVNISAVHFRQPDFIDGVKKILDATHMPASSLC 1354

Query: 140  VEITESAVAKNLPVVKDTIRKLHARGIVVLMDDFGSAYSSLNMLKDINVDVIKLDTKFIE 199
            +EITE  + K L V K  +++L   GI V +DDFG+ YSSL  L++  VD +K+D  F+ 
Sbjct: 1355 LEITEGVLMKELQVAKTHLKQLDDLGIEVAIDDFGTGYSSLAYLRNFEVDTLKIDRSFL- 1413

Query: 200  LSDENAGKGMKIIQSMIVMAKKLHLMIIAEGAQTKEQVDWLKAIGCGYIQGYYFYPPLPV 259
            +   + G    I+ S+I +A+ L L +IAEG +T EQ++ L + GC  +QGYYF  P+ V
Sbjct: 1414 IDIASNGADQAIVSSIIELARNLKLTVIAEGVETVEQLEQLFSRGCYIVQGYYFAKPMSV 1473

Query: 260  KRMETLL 266
               E  L
Sbjct: 1474 SDFEKYL 1480



 Score = 55.1 bits (131), Expect = 3e-11
 Identities = 43/151 (28%), Positives = 76/151 (50%), Gaps = 14/151 (9%)

Query: 439  DSLTGLLNRNAYDDDL-EYIQATHD--QPLTVVYVDMIGLHEINNHLGHAKGDSALCELA 495
            D LTGL NR+ + + L + IQA     + L ++++D+     +N+  GH+ GD+ L E +
Sbjct: 1060 DVLTGLPNRSLFSNRLMQSIQAAEQNGEKLALLFLDLDRFKHVNDSYGHSMGDALLVEAS 1119

Query: 496  DAMRACFDDDRIY-RVGGDEFVIV--------SCNHTVSQSMRRMARMRRDF-LEGDWDI 545
            + +++C   + +  R GGDEFVI+          NH   Q + ++    R F  E     
Sbjct: 1120 NRLQSCIGSEHLLCRFGGDEFVILLKNVKELSDINHLAEQLLAQIVAPFRLFGREFYIST 1179

Query: 546  SVGMAESDDGGDLPD-LINQAEIRMREDKKQ 575
            S+G++   D    P+  I  A++ M   K++
Sbjct: 1180 SIGISIWPDDAMQPEAFIKNADLAMYHAKEE 1210