Pairwise Alignments

Query, 751 a.a., GGDEF domain-containing protein from Bifidobacterium breve UCC2003

Subject, 948 a.a., hypothetical protein from Herbaspirillum seropedicae SmR1

 Score =  165 bits (418), Expect = 9e-45
 Identities = 87/248 (35%), Positives = 142/248 (57%), Gaps = 1/248 (0%)

Query: 21  DIDHALENGEFGCYLQPKCNAETGTIVGAEALVRWNHPKYGVIPPGWFVPVLERAGRICH 80
           D+ +AL++GEF  + QPK +  +G ++G+EAL+RW HP+ G++ P  F+ + E  G I  
Sbjct: 697 DLRNALDHGEFLLHYQPKVDLASGRVIGSEALIRWQHPQLGMVSPARFIGLAEETGLILP 756

Query: 81  VDVFVWRFVAEMLGRWEREGRNLVPVSVNVSMMDINQMDVADVIGGLLNEYNIDARLLQV 140
           +  +V R       +W+  G   + VSVN+S+    Q D+   I  +L +  +    L++
Sbjct: 757 IGAWVLRAACTQCRQWQLGGYADISVSVNLSVGQFLQKDLVSSIADVLEDTGLPPESLEL 816

Query: 141 EITESAVAKNLPVVKDTIRKLHARGIVVLMDDFGSAYSSLNMLKDINVDVIKLDTKFIEL 200
           E+TES +  ++      +  L   G+ + +DDFG+ YSSL  LK   +DV+K+D  F+  
Sbjct: 817 ELTESLMMTDVEHAIGILAGLKKLGVRLSIDDFGTGYSSLAYLKRFPIDVLKIDRSFVRD 876

Query: 201 SDENAGKGMKIIQSMIVMAKKLHLMIIAEGAQTKEQVDWLKAIGCGYIQGYYFYPPLPVK 260
              +A     I  S+I +A+ L L +IAEG +T EQ+D+L+  GC  IQGY F PP+P  
Sbjct: 877 ITIDADDA-AITASIISLARHLKLRVIAEGVETDEQLDYLRHYGCDEIQGYLFSPPVPAD 935

Query: 261 RMETLLAE 268
           + E +L +
Sbjct: 936 KFEQILRQ 943



 Score = 60.5 bits (145), Expect = 4e-13
 Identities = 61/194 (31%), Positives = 90/194 (46%), Gaps = 25/194 (12%)

Query: 438 RDSLTGLLNRNAYDDDLEY---IQATHDQPLTVVYVDMIGLHEINNHLGHAKGDSALCEL 494
           RD+LTGL+NR+     LE    +     Q L VV+VD+     +N+ LGH  GD+ L  +
Sbjct: 521 RDTLTGLINRHMLRHHLEQAIGVAERQKQALWVVFVDLDRFKFVNDTLGHKAGDTLLRTV 580

Query: 495 ADAMRACF-DDDRIYRVGGDEFVIVSCNHTVSQSMRRMARMRRDFLEGDWDI-------- 545
           A  +RA   + D + R+GGDEF+++           R  +   D +     +        
Sbjct: 581 AGRLRAAVREADTVARLGGDEFIMILPEQDELTLDTRSLQRIMDAVAAPVTLGGHTLFMT 640

Query: 546 -SVGMA-ESDDGGDLPDLINQAEIRMREDKK------QYYVNGGGKRQLRMLNNRLENIL 597
            SVG+A   +DG D   LI  A+I M   K+      Q+Y     ++ L  L  R+E  L
Sbjct: 641 CSVGVACYPNDGTDGETLIKHADIAMYRGKQTGRNNFQFYTPAMNEQALERL--RIEGDL 698

Query: 598 VRN--DDMKMLLEY 609
            RN  D  + LL Y
Sbjct: 699 -RNALDHGEFLLHY 711