Pairwise Alignments

Query, 896 a.a., DNA gyrase subunit A from Bifidobacterium breve UCC2003

Subject, 879 a.a., DNA gyrase, A subunit (RefSeq) from Shewanella loihica PV-4

 Score =  699 bits (1805), Expect = 0.0
 Identities = 384/883 (43%), Positives = 558/883 (63%), Gaps = 60/883 (6%)

Query: 45  DLQQEMRESYLAYALSVIVERALPDVRDGMKPVHRRVIYAMYDGGYRPDRGYNKCSRVVG 104
           +++ E++ SYL YA+SVIV RALPDVRDG+KPVHRRV++AM +     ++ Y K +RVVG
Sbjct: 12  NIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDWNKPYKKSARVVG 71

Query: 105 DVMGKYHPHGDSAIYDTLVRMAQSWSMRNLLVDGQGNFGSPGDDPAAAMRYTECRMAPLA 164
           DV+GKYHPHGDSA+YDT+VRMAQ +SMR  LVDGQGNFGS   D AAAMRYTE RM  LA
Sbjct: 72  DVIGKYHPHGDSAVYDTIVRMAQPFSMRYTLVDGQGNFGSVDGDAAAAMRYTEIRMDKLA 131

Query: 165 MEMVRDIDKDTVDFVPNYDGKTQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHNMREVA 224
            +++ D++K+TVD+VPNYDG  Q P VLP R P LLVNGS+GIAVGMATNIPPHN+ EV 
Sbjct: 132 HQLLADLEKETVDYVPNYDGTEQIPAVLPTRIPALLVNGSSGIAVGMATNIPPHNLSEVI 191

Query: 225 EGVHWALEHPDASREELLENLIRIIKGPDFPTGATILGHKGIEQAYRTGRGLITMRAVVN 284
            G    ++ P  S E+L+E+    I GPDFPT A + G KGIE AY+TGRG   MRA   
Sbjct: 192 SGCLALIDEPSLSIEQLMEH----IPGPDFPTAAIVNGRKGIEDAYKTGRGKAVMRARAT 247

Query: 285 TE-EINGRMCLVVTELPYQVNPDRLVVSIREAVRDGKIQGIADMRDETSGRTGQRLVLVL 343
            E E NGR  ++VTE+PYQVN  RL+  I E V+D KI+GI+ +RDE S + G R+V+ +
Sbjct: 248 VETEDNGRERIIVTEIPYQVNKARLIEKIAELVKDKKIEGISGLRDE-SDKDGMRIVIEV 306

Query: 344 KRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVNHQLDVIARRTA 403
           KR  V +V+LNNLY  +QLQ +FG NM+AL +G P+  +L   +  ++ H+ +V+ RRT 
Sbjct: 307 KRGEVGEVILNNLYAQTQLQTSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRTV 366

Query: 404 YLKREAEERDHILQGYLKALDMLDEVIALIRASEDTDTART-------------GLME-- 448
           +  R+A ER HIL+    AL  +D +IALI+AS     A+T             G++E  
Sbjct: 367 FELRKARERAHILEALAIALANIDPIIALIKASPTPAEAKTKLVSQGWALGNVQGMLEKA 426

Query: 449 -------------------LLDIDQVQADAILAMQLRTLTRMNRDKIVAEHEELQRKIAD 489
                              L  + + QA AIL ++L  LT +  +KI++E+EEL   IA 
Sbjct: 427 GDDAARPEWLSAEFGIRDGLYYLTEQQAQAILDLRLHKLTGLEHEKILSEYEELLELIAA 486

Query: 490 YIDILAKPERQRKIIGDELDEIVGKYGDERRTKILPFSGEMNVEDLIAEENVVVTVTHSG 549
            + IL  PER  ++I +EL E++  +GDERRT++   + ++++EDLI EE+VVVT++H G
Sbjct: 487 LLYILRSPERLMEVIKEELQEVLEVFGDERRTELNASAVDISLEDLINEEDVVVTLSHLG 546

Query: 550 FIKRTKADEYRAQHRGGKGIKGTKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRIKAYEL 609
           + K     +Y+AQ RGGKG   TK++++D V+   + +TH+ +L F++ G++Y +K Y+L
Sbjct: 547 YAKYQPLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQL 606

Query: 610 PEGSRDSKGQHVANLLQFAPDESIQAVLSIPNYEVAKYLVLATRSGKVKKTPLAEYDSPR 669
           P  SR ++G+ + NLL  A  E I A+L +  Y+  KY+++AT  G VKKT L +Y  PR
Sbjct: 607 PLASRQARGRPIINLLPLAEGERITAILPVREYDADKYVIMATSHGTVKKTSLDQYSRPR 666

Query: 670 QGGLIAVRLMADENGENADELIGAALCNAEDDIILVSKLGMSLKFQANDEQLRPMGRQTA 729
             G+IAV L      ++ D+LIG  + N +++++L S  G  ++F  +++Q+R MGR   
Sbjct: 667 ANGIIAVNL------KDGDQLIGVDITNGDNEVMLFSNEGKVVRF--SEDQVRGMGRTAT 718

Query: 730 GVQGMKFREGDELLAMDVVWGDSDKDLFVVTNEGFAKRTAISEYRLQGRNGLGIKAVQLV 789
           GV+G+K  +G  ++++ V    +D  +  VT  G+ KRT + EY  + R   G+ ++++ 
Sbjct: 719 GVRGIKLEDGQSVVSLIV--PKNDGAILTVTENGYGKRTELDEYPAKSRATKGVVSIKVS 776

Query: 790 EGRGSLVGALVVSEDDQVMAIMKSGKVIRSNVDEVKRTGRNTQGVTFAKPDKGDEILSIA 849
           E  G++VGA+ V E+D++M I   G ++R+    V   GRNTQGVT  +    + ++ + 
Sbjct: 777 ERNGAVVGAVQVLENDEIMLISDKGTLVRTPASGVSTIGRNTQGVTIIRTATDETVVGLQ 836

Query: 850 RNEEKDDPEE----------EVADNGTAEAGQSPAEPVNESNE 882
           R +E  D +E          +  +    E     AEP  E NE
Sbjct: 837 RIDEIQDEQEFDEEGNPIITDTVEEQQVEGEAPEAEPDVEPNE 879