Pairwise Alignments

Query, 896 a.a., DNA gyrase subunit A from Bifidobacterium breve UCC2003

Subject, 919 a.a., DNA gyrase, A subunit (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  703 bits (1814), Expect = 0.0
 Identities = 396/917 (43%), Positives = 565/917 (61%), Gaps = 79/917 (8%)

Query: 45  DLQQEMRESYLAYALSVIVERALPDVRDGMKPVHRRVIYAMYDGGYRPDRGYNKCSRVVG 104
           +++ E++ SYL YA+SVIV RALPDVRDG+KPVHRRV++AM +     ++ Y K +RVVG
Sbjct: 12  NIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKKSARVVG 71

Query: 105 DVMGKYHPHGDSAIYDTLVRMAQSWSMRNLLVDGQGNFGSPGDDPAAAMRYTECRMAPLA 164
           DV+GKYHPHGDSA+YDT+VRMAQ +S+R  LVDGQGNFGS   D AAAMRYTE RM  LA
Sbjct: 72  DVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMRYTEIRMDKLA 131

Query: 165 MEMVRDIDKDTVDFVPNYDGKTQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHNMREVA 224
            +++ D++K+TVD+VPNYDG  Q P VLP R PNLL+NGS+GIAVGMATNIPPHN+ EV 
Sbjct: 132 HQLLADLEKETVDYVPNYDGTEQIPAVLPTRVPNLLINGSSGIAVGMATNIPPHNLTEVV 191

Query: 225 EGVHWALEHPDASREELLENLIRIIKGPDFPTGATILGHKGIEQAYRTGRGLITMRAVVN 284
           +G    +  P  S E+L++     I GPDFPT A I G KGI  AY+TGRG   MRA+  
Sbjct: 192 KGCLALIADPALSIEQLMD----YIPGPDFPTAAIINGRKGIIDAYKTGRGRAIMRALAE 247

Query: 285 TE-EINGRMCLVVTELPYQVNPDRLVVSIREAVRDGKIQGIADMRDETSGRTGQRLVLVL 343
            E E NGR  ++VTE+PYQVN  RL+  I E V+D K++GI+ +RDE S + G R+V+ +
Sbjct: 248 VETEENGRERIIVTEIPYQVNKARLIEKIAELVKDKKLEGISGLRDE-SDKDGMRIVIEI 306

Query: 344 KRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVNHQLDVIARRTA 403
           KR  V +VVLNNLY  +Q+Q +FG NM+AL +G P+  +L   +  ++ H+ +V+ RRT 
Sbjct: 307 KRGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRTV 366

Query: 404 YLKREAEERDHILQGYLKALDMLDEVIALIRASEDTDTARTGLME--------------- 448
           +  R+A ER HIL+    AL  +D +IALI+AS     A+  L+E               
Sbjct: 367 FELRKARERAHILEALAVALANIDPIIALIKASPTPADAKVKLVEQGWALGHVQGMLEKA 426

Query: 449 -------------------LLDIDQVQADAILAMQLRTLTRMNRDKIVAEHEELQRKIAD 489
                              L  + + QA AIL ++L  LT +  DKI+AE+EEL   IA 
Sbjct: 427 GDDAARPEWLEPEYGIRDGLYYLTEQQAQAILELRLHRLTGLEHDKIIAEYEELLEFIAG 486

Query: 490 YIDILAKPERQRKIIGDELDEIVGKYGDERRTKILPFSGEMNVEDLIAEENVVVTVTHSG 549
            + IL  PER  ++I +EL+EI+ +YGD RRT I     +M++EDLI EE+VVVT++H G
Sbjct: 487 LLFILRSPERLMEVIKEELEEILAEYGDARRTVINANEIDMSLEDLINEEDVVVTLSHLG 546

Query: 550 FIKRTKADEYRAQHRGGKGIKGTKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRIKAYEL 609
           + K     +Y+AQ RGGKG   TK++++D V+   + +TH+ +L F++ G++Y +K Y+L
Sbjct: 547 YAKYQPLSDYQAQRRGGKGKVATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQL 606

Query: 610 PEGSRDSKGQHVANLLQFAPDESIQAVLSIPNYEVAKYLVLATRSGKVKKTPLAEYDSPR 669
           P  SR S+G+ + NLL  A  E I A+L +  Y   KY+++AT +G VKKT L  Y +PR
Sbjct: 607 PLASRTSRGRPIVNLLPLADGERITAILPVREYAEDKYIIMATSNGTVKKTALTAYSNPR 666

Query: 670 QGGLIAVRLMADENGENADELIGAALCNAEDDIILVSKLGMSLKF--------------- 714
             G+IAV L      ++ D+LIG  + N +D+I+L S  G  ++F               
Sbjct: 667 ANGIIAVNL------KDGDQLIGVDITNGDDEIMLFSNEGKVVRFKEGEEVAVLDENGNP 720

Query: 715 --------QANDEQLRPMGRQTAGVQGMKFREGDELLAMDVVWGDSDKDLFVVTNEGFAK 766
                   Q N + +RPMGR   GV+G+K  EG  ++++ V     D  +  VT  G+ K
Sbjct: 721 VLDEEGNPQINFKGVRPMGRGATGVRGIKLEEGQRVVSLIV--PKDDGAILTVTENGYGK 778

Query: 767 RTAISEYRLQGRNGLGIKAVQLVEGRGSLVGALVVSEDDQVMAIMKSGKVIRSNVDEVKR 826
           RT +SEY  + R   G+ ++++ E  G++VGA+ V  +D++M I   G ++R+  + V  
Sbjct: 779 RTELSEYPSKSRATKGVVSIKVSERNGAVVGAVQVGGNDEIMLISDKGTLVRTPANGVSI 838

Query: 827 TGRNTQGVTFAKPDKGDEILSIARNEE--KDDPEEEVADNG------TAEAGQSPAEPVN 878
            GRNTQGVT  +    ++++ + R +E   D+ E E+ +NG       AE      EP+ 
Sbjct: 839 IGRNTQGVTIIRTASDEKVVGLQRIDEIQGDEDEVELDENGMPIAPVIAEGDSVQEEPLE 898

Query: 879 ESNETAQSGENVNNVDE 895
           E +E  +  E+    DE
Sbjct: 899 EEDELEELDEDEELDDE 915