Pairwise Alignments

Query, 696 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit B from Bifidobacterium breve UCC2003

Subject, 804 a.a., DNA gyrase, B subunit from Pseudomonas stutzeri RCH2

 Score =  502 bits (1292), Expect = e-146
 Identities = 281/605 (46%), Positives = 376/605 (62%), Gaps = 31/605 (5%)

Query: 32  MAPEH-YEASDLRVLEGLEAVRIRPGMYIGSTGP-RGLHHLVYEIVDNSVDEALAGYASH 89
           M+  H Y++S ++VL+GL+AVR RPGMYIG T    GLHH+V+E+VDNS+DEALAG+ S 
Sbjct: 1   MSENHTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCSD 60

Query: 90  IEVTILPDNGIRVVDDGRGIPVDEVPGEGVSGVETVMTKLHAGGKFGGGGYAVSGGLHGV 149
           I +TI  D  I V D+GRGIPVD +  EGVS  E +MT LHAGGKF    Y VSGGLHGV
Sbjct: 61  ISITIHTDESITVRDNGRGIPVD-IHEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 119

Query: 150 GISVVNALSTHVDIEVRRQGFHWTQTYVDQHPVAPLKQGEPMAEDESTGTSVTFWADPKI 209
           G+SVVNALS  + + +RR+G  W Q Y    P APL    P+ E +S+GT + F    + 
Sbjct: 120 GVSVVNALSEELMLTIRREGKVWEQLYRHGVPQAPLA---PVGETDSSGTQIHFKPSAET 176

Query: 210 FETTIYDFETLRSRFQQMAFLNKGLKLSLTDERVTDQAGDEVAGDAEGEPGEKHQTVTYQ 269
           F+   + ++ L  R ++++FLN G+ + L DER   +                     ++
Sbjct: 177 FQNIHFSWDILAKRLRELSFLNSGVGIVLRDERTAKEE-------------------LFK 217

Query: 270 YLNGIKDYVDYLVKVRKATPVEEDVISFEAEDLKLGISAELAMQWTTAYSEAVHTFANTI 329
           Y  G+  +V YL   +  TPV E V  F  +    G+  E+A+QW  +++E +  F N I
Sbjct: 218 YEGGLSAFVAYLNTNK--TPVNE-VFHFNVQRDD-GVGVEVALQWNDSFNENILCFTNNI 273

Query: 330 STTEGGTHEEGFRAALTSLVNRYARDKAILKDKDENLSGDDVREGLTAVISVKLTNPQFE 389
              +GGTH  GFR+ALT  +N Y   + + K      +GDD REGLTA+ISVK+ +P+F 
Sbjct: 274 PQRDGGTHLAGFRSALTRNLNSYIEQEGLAKKHKIATTGDDAREGLTAIISVKVPDPKFS 333

Query: 390 GQTKTKLGNSEAKTFVQRVMTDKLGDWFDAHPAEAKNIIQKAIEASRARLAAKKARENTR 449
            QTK KL +SE KT V++ M     D+   HP+EAK ++ K I+A+RAR AA+KARE TR
Sbjct: 334 SQTKDKLVSSEVKTAVEQEMGKHFADFLLEHPSEAKAVVGKMIDAARAREAARKAREMTR 393

Query: 450 RKSIFESAGMPDKLKDCQSSNPEECELFIVEGDSAGGSAIQGRNPITQAILPLRGKILNT 509
           RK   + AG+P KL DCQ  +P   EL+IVEGDSAGGSA QGRN  TQAILPL+GKILN 
Sbjct: 394 RKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKTQAILPLKGKILNV 453

Query: 510 ERASLDRMMKSDTIESLITAVGGGYGED-FDISKVRYHKVIIMADADVDGAHIATLNLTL 568
           E+A  D+M+ S  + +LITA+G G G D ++I K+RYH +IIM DADVDG+HI TL LT 
Sbjct: 454 EKARFDKMISSQEVGTLITALGCGIGRDEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTF 513

Query: 569 FFRYMRPMITAGYVYVAMPPLYRLKWTKGPHDFVYTDAERDRVLAEGKANGRQLPKGEGI 628
           FFR +  +I  GYVY+A PPLY++K  K    ++  D   +  L +       L   EG 
Sbjct: 514 FFRQLPELIERGYVYIAQPPLYKVKRGK-QEQYIKDDEAMEEYLTQSALEDASLHVNEGA 572

Query: 629 QRYKG 633
               G
Sbjct: 573 PGLSG 577



 Score = 82.4 bits (202), Expect = 8e-20
 Identities = 41/68 (60%), Positives = 50/68 (73%)

Query: 628 IQRYKGLGEMSYQELWETTMDPEHRILKQVHIEDAAAADETFSMLMGDEVEPRRLFIQRN 687
           +QRYKGLGEM+  +LWETTMDP  R + +V IEDA  AD+ F+ LMGD VEPRR FI+ N
Sbjct: 736 VQRYKGLGEMNPDQLWETTMDPNVRRMLKVTIEDAIGADQIFNTLMGDAVEPRRDFIETN 795

Query: 688 AKNVRWID 695
           A  V  +D
Sbjct: 796 ALAVSNLD 803