Pairwise Alignments

Query, 696 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit B from Bifidobacterium breve UCC2003

Subject, 802 a.a., DNA gyrase, B subunit (NCBI) from Rhodospirillum rubrum S1H

 Score =  527 bits (1357), Expect = e-154
 Identities = 282/564 (50%), Positives = 368/564 (65%), Gaps = 25/564 (4%)

Query: 32  MAPEHYEASDLRVLEGLEAVRIRPGMYIGSTGP-RGLHHLVYEIVDNSVDEALAGYASHI 90
           M  + Y +  ++VL+GLEAVR RPGMYIG T    GLHH+VYE+VDN++DEALAGY  H 
Sbjct: 1   MTQQAYTSESIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGYCDHS 60

Query: 91  EVTILPDNGIRVVDDGRGIPVDEVPGEGVSGVETVMTKLHAGGKFGGGGYAVSGGLHGVG 150
           EV +  D  + V D+GRGIPVD    EGVS  E +MT+LHAGGKF    Y VSGGLHGVG
Sbjct: 61  EVILNGDGSVTVCDNGRGIPVDIHREEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVG 120

Query: 151 ISVVNALSTHVDIEVRRQGFHWTQTYVDQHPVAPLKQGEPMAEDESTGTSVTFWADPKIF 210
           +SVVNALS  +D+ + R G      +     VAPLK      +   TGT +TF A P IF
Sbjct: 121 VSVVNALSDWLDLRIWRDGKEHYVRFEHGEVVAPLKVVGDCGD--RTGTEITFLASPAIF 178

Query: 211 ETTIYDFETLRSRFQQMAFLNKGLKLSLTDERVTDQAGDEVAGDAEGEPGEKHQTVTYQY 270
             T YD+ TL  R +++AFLN G++L LTD+R                 G + +T  + Y
Sbjct: 179 AITTYDYATLEHRLRELAFLNSGVRLLLTDKR-----------------GTEPRTTKFHY 221

Query: 271 LNGIKDYVDYLVKVRKATPVEEDVISFEAEDLKLGISAELAMQWTTAYSEAVHTFANTIS 330
             GI+++V YL K +  T +    ++   E  + G+  EL+++WT +Y E V  F N I 
Sbjct: 222 DGGIEEFVRYLDKSK--TVLHSPPVTAIGE--RDGMIVELSLEWTDSYHETVLCFTNNIP 277

Query: 331 TTEGGTHEEGFRAALTSLVNRYARDKAILKDKDENLSGDDVREGLTAVISVKLTNPQFEG 390
             +GGTH  GFR  LT  +N YA+D  ++K +   L+GDD+REGLT V+SVK+ +P+F  
Sbjct: 278 QRDGGTHMAGFRGGLTRTLNSYAQDSGLMKKEKVTLTGDDMREGLTCVLSVKVPDPKFSS 337

Query: 391 QTKTKLGNSEAKTFVQRVMTDKLGDWFDAHPAEAKNIIQKAIEASRARLAAKKARENTRR 450
           QTK KL +SE +  V+ V+ ++LG W + HP EA+ II K +EA+ AR AA++ARE TRR
Sbjct: 338 QTKEKLVSSEVRPVVEAVVVERLGQWLEEHPQEARKIIGKVVEAAAAREAARRARELTRR 397

Query: 451 KSIFESAGMPDKLKDCQSSNPEECELFIVEGDSAGGSAIQGRNPITQAILPLRGKILNTE 510
           K   + A +P KL DCQ+ +P + ELFIVEGDSAGGSA QGR+   QAILPLRGKILN E
Sbjct: 398 KGALDMASLPGKLADCQNRDPAQSELFIVEGDSAGGSAKQGRDRGYQAILPLRGKILNVE 457

Query: 511 RASLDRMMKSDTIESLITAVGGGYG-EDFDISKVRYHKVIIMADADVDGAHIATLNLTLF 569
           RA  D+M+ S  I +LI A+G G G +DFD+ K RYHK+IIM DADVDG+HI TL LT F
Sbjct: 458 RARFDKMLSSAEIGTLIAALGTGIGKDDFDVGKARYHKIIIMTDADVDGSHIRTLLLTFF 517

Query: 570 FRYMRPMITAGYVYVAMPPLYRLK 593
           FR M  ++  GY+Y+A PPLYR K
Sbjct: 518 FRQMPEVVEKGYLYIAQPPLYRAK 541



 Score = 85.9 bits (211), Expect = 7e-21
 Identities = 43/72 (59%), Positives = 53/72 (73%)

Query: 624 KGEGIQRYKGLGEMSYQELWETTMDPEHRILKQVHIEDAAAADETFSMLMGDEVEPRRLF 683
           KG  IQRYKGLGEM+ ++LWETT+DP  R L QV +   + A++ FS LMGD VEPRR F
Sbjct: 730 KGIAIQRYKGLGEMNPEQLWETTLDPNVRRLLQVKVNQVSDAEDVFSTLMGDIVEPRRDF 789

Query: 684 IQRNAKNVRWID 695
           IQ NA NV+ +D
Sbjct: 790 IQDNALNVQNLD 801