Pairwise Alignments

Query, 696 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit B from Bifidobacterium breve UCC2003

Subject, 779 a.a., DNA gyrase subunit B-like protein from Marinobacter adhaerens HP15

 Score =  478 bits (1229), Expect = e-139
 Identities = 269/570 (47%), Positives = 360/570 (63%), Gaps = 33/570 (5%)

Query: 57  MYIGSTGP-RGLHHLVYEIVDNSVDEALAGYASHIEVTILPDNGIRVVDDGRGIPVDEVP 115
           MYIG T    GLHH+V+E+VDNS+DEALAGY S I V I PD  + V D+GRGIPVD   
Sbjct: 1   MYIGDTDDGTGLHHMVFELVDNSIDEALAGYCSEIGVIIHPDESVTVKDNGRGIPVDLHE 60

Query: 116 GEGVSGVETVMTKLHAGGKFGGGGYAVSGGLHGVGISVVNALSTHVDIEVRRQGFHWTQT 175
            EGVS  E +MT LHAGGKF    Y VSGGLHGVG+SVVNALS+ + + +RR    + QT
Sbjct: 61  EEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSSTLTLTIRRDNKVYEQT 120

Query: 176 YVDQHPVAPLKQGEPMAEDESTGTSVTFWADPKIFETTIYDFETLRSRFQQMAFLNKGLK 235
           Y    P APL     + E +++GT V F   P+ F    + ++ L  R +++AFLN G++
Sbjct: 121 YTHGVPNAPLAA---VGETDASGTKVHFIPSPETFTHIEFHYDILAKRLRELAFLNSGVR 177

Query: 236 LSLTDERVTDQAGDEVAGDAEGEPGEKHQTVTYQYLNGIKDYVDYLVKVRKATPVEEDVI 295
           + LTDER         +G  E           ++Y  G++ +V++L   +  TP+   V 
Sbjct: 178 IRLTDER---------SGKEE----------VFEYEGGLRAFVEHLNSNK--TPINR-VF 215

Query: 296 SF--EAEDLKLGISAELAMQWTTAYSEAVHTFANTISTTEGGTHEEGFRAALTSLVNRYA 353
            F  E ED   GI+ E++MQW  A+ E ++ F N I   +GGTH  GFRAALT  +N Y 
Sbjct: 216 HFNRERED---GIAVEVSMQWNDAFQENIYCFTNNIPQRDGGTHLAGFRAALTRSLNNYI 272

Query: 354 RDKAILKDKDENLSGDDVREGLTAVISVKLTNPQFEGQTKTKLGNSEAKTFVQRVMTDKL 413
             + + K      SGDD REGLTA+ISVK+ +P+F  QTK KL +SE KT V++ +    
Sbjct: 273 EQEGLGKKAKVATSGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQELYQSF 332

Query: 414 GDWFDAHPAEAKNIIQKAIEASRARLAAKKARENTRRKSIFESAGMPDKLKDCQSSNPEE 473
            ++    P EAK I+ K +EA+RAR AA+KAR+ TRRK   + AG+P KL DCQ  +P  
Sbjct: 333 AEYLQEQPNEAKLIVNKMLEAARAREAARKARDMTRRKGALDIAGLPGKLADCQEKDPAL 392

Query: 474 CELFIVEGDSAGGSAIQGRNPITQAILPLRGKILNTERASLDRMMKSDTIESLITAVGGG 533
            EL+IVEGDSAGGSA QGR+  TQAILPL+GKILN E+A  D+M+ S  + +LITA+G G
Sbjct: 393 SELYIVEGDSAGGSAKQGRDRKTQAILPLKGKILNVEKARFDKMLSSAEVGTLITALGCG 452

Query: 534 YG-EDFDISKVRYHKVIIMADADVDGAHIATLNLTLFFRYMRPMITAGYVYVAMPPLYRL 592
            G E+F+  K+RYH +IIM DADVDG+HI TL LT  FR MR +I  G+V++AMPPLY++
Sbjct: 453 IGREEFNPDKLRYHSIIIMTDADVDGSHIRTLLLTFLFRQMREIIERGHVFIAMPPLYKV 512

Query: 593 KWTKGPHDFVYTDAERDRVLAEGKANGRQL 622
           K  K    ++  +  ++  L +    G QL
Sbjct: 513 KRGK-QEQYLKDEKAKEAYLTQTALEGAQL 541



 Score = 94.0 bits (232), Expect = 2e-23
 Identities = 46/76 (60%), Positives = 58/76 (76%)

Query: 620 RQLPKGEGIQRYKGLGEMSYQELWETTMDPEHRILKQVHIEDAAAADETFSMLMGDEVEP 679
           ++  +G  IQRYKGLGEM+ ++LWETTMDPE R + +V IEDA AAD+ F+ LMGD+VEP
Sbjct: 703 KEAQRGLNIQRYKGLGEMNPEQLWETTMDPETRRMMKVTIEDAIAADQIFTTLMGDDVEP 762

Query: 680 RRLFIQRNAKNVRWID 695
           RR FIQ NA  V  +D
Sbjct: 763 RRNFIQTNALEVTNLD 778