Pairwise Alignments

Query, 696 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit B from Bifidobacterium breve UCC2003

Subject, 805 a.a., DNA gyrase, B subunit (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  511 bits (1317), Expect = e-149
 Identities = 277/566 (48%), Positives = 362/566 (63%), Gaps = 31/566 (5%)

Query: 32  MAPEHYEASDLRVLEGLEAVRIRPGMYIGSTGP-RGLHHLVYEIVDNSVDEALAGYASHI 90
           M+   Y++S ++VL+GL+AVR RPGMYIG T    GLHH+V+E+VDNS+DEALAG+ + I
Sbjct: 1   MSENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCTDI 60

Query: 91  EVTILPDNGIRVVDDGRGIPVDEVPGEGVSGVETVMTKLHAGGKFGGGGYAVSGGLHGVG 150
            +TI  D  + V DDGRGIPV     EGVS  E +MT LHAGGKF    Y VSGGLHGVG
Sbjct: 61  TITIHVDGSVSVKDDGRGIPVSIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120

Query: 151 ISVVNALSTHVDIEVRRQGFHWTQTYVDQHPVAPLKQGEPMAEDESTGTSVTFWADPKIF 210
           +SVVNALS  + + +RR G    Q Y    P AP+K+   + +   TGT + FW   + F
Sbjct: 121 VSVVNALSKKLQLTIRRDGKVHEQFYTHGVPDAPIKE---IGDATKTGTEIRFWPSEQTF 177

Query: 211 ETTIYDFETLRSRFQQMAFLNKGLKLSLTDERVTDQAGDEVAGDAEGEPGEKHQTVTYQY 270
               + FE L  R ++++FLN G+ + L DER                    ++   ++Y
Sbjct: 178 SNVEFHFEILAKRVRELSFLNSGVGIRLVDER-------------------DNKNEFFKY 218

Query: 271 LNGIKDYVDYLVKVRKATPVEEDVISF--EAEDLKLGISAELAMQWTTAYSEAVHTFANT 328
             GI  +VDYL   R  TPV +DV  F  E +D   GI+ E+AMQW   Y E +  F N 
Sbjct: 219 EGGISAFVDYLN--RNKTPVNKDVFHFMQERDD---GITVEVAMQWNDGYQENIFCFTNN 273

Query: 329 ISTTEGGTHEEGFRAALTSLVNRYARDKAILKDKDENLSGDDVREGLTAVISVKLTNPQF 388
           I   +GGTH  GFR+ALT  +N Y  ++   K    N +GDD REGLTAVISVK+ +P+F
Sbjct: 274 IPQRDGGTHLAGFRSALTRNLNNYMENEGYNKKGKTNATGDDAREGLTAVISVKVPDPKF 333

Query: 389 EGQTKTKLGNSEAKTFVQRVMTDKLGDWFDAHPAEAKNIIQKAIEASRARLAAKKARENT 448
             QTK KL +SE K  V++ M +KL D+   +PA+AK I+ K ++A+RAR AA+KARE T
Sbjct: 334 SSQTKDKLVSSEVKAAVEQTMGEKLNDYLLENPADAKLIVGKIVDAARAREAARKAREMT 393

Query: 449 RRKSIFESAGMPDKLKDCQSSNPEECELFIVEGDSAGGSAIQGRNPITQAILPLRGKILN 508
           RRK   +  G+P KL DCQ  +P   E++IVEGDSAGGSA QGRN   QAILPL+GKILN
Sbjct: 394 RRKGALDLGGLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILN 453

Query: 509 TERASLDRMMKSDTIESLITAVGGGYGED-FDISKVRYHKVIIMADADVDGAHIATLNLT 567
            E+A  D+M+ S  + +LITA+G G G D ++  K RYH +IIM DADVDG+HI TL LT
Sbjct: 454 VEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKTRYHNIIIMTDADVDGSHIRTLLLT 513

Query: 568 LFFRYMRPMITAGYVYVAMPPLYRLK 593
            FFR M  +I  GYVY+A PPL+++K
Sbjct: 514 FFFRQMPELIERGYVYIAQPPLFKVK 539



 Score = 92.4 bits (228), Expect = 8e-23
 Identities = 45/72 (62%), Positives = 56/72 (77%)

Query: 624 KGEGIQRYKGLGEMSYQELWETTMDPEHRILKQVHIEDAAAADETFSMLMGDEVEPRRLF 683
           +G  IQRYKGLGEM+ ++LWETTMDPE R + QV I+DA  AD+ F+ LMGD+VEPRR F
Sbjct: 733 RGLYIQRYKGLGEMNPEQLWETTMDPESRRMLQVTIDDAVGADQLFTCLMGDQVEPRREF 792

Query: 684 IQRNAKNVRWID 695
           I+ NA NV  +D
Sbjct: 793 IEANALNVANLD 804