Pairwise Alignments

Query, 374 a.a., DNA polymerase III subunit beta from Bifidobacterium breve UCC2003

Subject, 366 a.a., DNA polymerase III subunit beta from Vibrio cholerae E7946 ATCC 55056

 Score = 94.4 bits (233), Expect = 5e-24
 Identities = 87/379 (22%), Positives = 169/379 (44%), Gaps = 22/379 (5%)

Query: 1   MKVEIDTAALADAVAWTSRVIDARPSNPILAGVKLEAIDGTLQFSAFNYEISARHHIEA- 59
           MK  I+ + L   +   S  +  R S PIL  + L+  +  L  +A + E+     +   
Sbjct: 1   MKFTIERSHLIKPLQQVSGTLGGRASLPILGNLLLKVEENQLSMTATDLEVELISRVTLE 60

Query: 60  GVDEVGSALVLGKLLADITKSLRSEKTY-LTTDGSTLTITSGKSKFTLQLMPDAEYPDLP 118
           G  E GS  V  +   DI + L       +  +G  + + SG+S+F+L  +P +++P++ 
Sbjct: 61  GEFEAGSITVPARKFLDICRGLPDSAVITVLLEGDRIQVRSGRSRFSLATLPASDFPNIE 120

Query: 119 ----VVPPMLGQVDAQTFVQAVNQASVAVSREENRPVLTGVRMQFQDDKVIMTSTDRFRL 174
                V   L Q + +  ++   +   +++ ++ R  L G+  +     +   +TD  R+
Sbjct: 121 DWQSEVQVSLTQAELRGLIE---KTQFSMANQDVRYYLNGMLFEIDGTTLRSVATDGHRM 177

Query: 175 ARAAFTWTPQDANVDTITLVRGSLLKDVARSLDE-HQNIRLDFDADNPTLLGFENAGRVS 233
           A A        A    I   +G L  ++ + LD   Q + L     N   L  E    V 
Sbjct: 178 AVAQAQLGADFAQKQIIVPRKGVL--ELVKLLDAPEQPVVLQIGHSN---LRAEVNHFVF 232

Query: 234 TSQLIDGEFPAVDRLFADEYPIQAVVNKQDLLDAISRVALVA-ERNAPIRMMFTGQELAL 292
           TS+L+DG FP   R+             ++L  A SR A+++ E+   +R+      + +
Sbjct: 233 TSKLVDGRFPDYRRVLPQHTSKTLQTGCEELRQAFSRAAILSNEKFRGVRVNLADNGMRI 292

Query: 293 SAGSADEAQANETLDIDMDGDEITVAFNPSYLKEGLSAIAEPFVRIKMTTPVKPVEFNGQ 352
           +A + ++ +A E LD+  +G+ I + FN SY+ + L+ +    VR+ M+      + N  
Sbjct: 293 TANNPEQEEAEELLDVSFEGEPIEIGFNVSYILDVLNTLRCDNVRVSMS------DANAS 346

Query: 353 QEADSDESMDYRYLLVPMR 371
              ++ +     Y+++P+R
Sbjct: 347 ALVENVDDDSAMYVVMPIR 365