Pairwise Alignments

Query, 374 a.a., DNA polymerase III subunit beta from Bifidobacterium breve UCC2003

Subject, 366 a.a., DNA polymerase III, beta subunit (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 92.8 bits (229), Expect = 1e-23
 Identities = 94/382 (24%), Positives = 177/382 (46%), Gaps = 28/382 (7%)

Query: 1   MKVEIDTAALADAVAWTSRVIDARPSNPILAGVKLEAIDGTLQFSAFNYEIS-ARHHIEA 59
           MK  ID  AL   +      ++ R + PILA + +E    +L+ +  + E+      +  
Sbjct: 1   MKFSIDRDALLKPLQLVCGAVERRHNLPILANLLVEVSGHSLKLTGTDLEVELVGQAVIH 60

Query: 60  GVDEVGSALVLGKLLADITKSL--RSEKTYLTTDGSTLTITSGKSKFTLQLMPDAEYPDL 117
           G  E G   V  K L DI KSL  +SE      D   L + SG+S+F+L  +P  EYP++
Sbjct: 61  GDIEEGRTTVPAKKLLDIVKSLPEQSELKVEQQDNKWL-LRSGRSRFSLATLPAEEYPNV 119

Query: 118 PVVPPMLGQVDAQTFVQAVNQAS-VAVSREENRPVLTGVRMQFQDDKVIMTSTDRFRLAR 176
                 +     Q  ++++  A+  +++ ++ R  L G+ ++ + + +   +TD  RLA 
Sbjct: 120 EAFQAEIEFTLKQGVLKSLIDATQFSMANQDVRYYLNGLLIETEGNMLRAIATDGHRLAL 179

Query: 177 AAFTWTPQDANVDTITLVRGSLLKDVARSLDEHQNIRLDFDADNPTLLGFENAGR----- 231
           +      Q      I   +G +  ++AR L+         D D    +G +NA R     
Sbjct: 180 SHRVIEAQLPEKQVIVPRKGVM--EMARLLETD-------DLDIAISIG-DNAIRATTST 229

Query: 232 -VSTSQLIDGEFPAVDRLFADEYPIQAVVNKQDLLDAISRVALVA-ERNAPIRMMFTGQE 289
            V TS+L+DG FP   R+         + ++     A++R ++++ E+   +R+      
Sbjct: 230 TVFTSKLVDGRFPDYRRVLPKGGDKIVIASRNHFKQALTRASILSNEKFRGVRIQLEAGL 289

Query: 290 LALSAGSADEAQANETLDIDMDGDEITVAFNPSYLKEGLSAIAEPFVRIKMTTPVKPVEF 349
           L ++A + ++ +A E +D+D +   + + FN SYL + L+ +    VRI +      ++ 
Sbjct: 290 LKITANNPEQEEAEEIIDVDYNNLPLEIGFNVSYLLDVLNNLKSDDVRITL------IDG 343

Query: 350 NGQQEADSDESMDYRYLLVPMR 371
           N     ++    D  Y+++PMR
Sbjct: 344 NSSALLENHLEEDSMYVVMPMR 365