Pairwise Alignments

Query, 566 a.a., methyl-accepting chemotaxis protein from Burkholderia phytofirmans PsJN

Subject, 522 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  276 bits (706), Expect = 1e-78
 Identities = 193/535 (36%), Positives = 271/535 (50%), Gaps = 60/535 (11%)

Query: 1   MRNNQPVTGHEYEFPSSHMLVSATDLTGRIQYCNPAFIAVSGFTRDELIGQPHNLIRHPD 60
           MRNNQPVT  EY FP    LVS TDL G+I YCN  F+ VSGF RDELI  PHNL+RHPD
Sbjct: 1   MRNNQPVTQREYAFPDQQRLVSTTDLKGQITYCNNIFVEVSGFDRDELIRAPHNLVRHPD 60

Query: 61  MPREAFADLWATIRDGRPWTALVKNRRKNGDHYWVHANVTPVV-EKGAVVGYLSVRVKPE 119
           +P   F  +W T++ G+PW  +VKNRRK GDHYWV+A VTP++ ++  V GY SVR KP 
Sbjct: 61  VPPAVFDHMWTTLKQGKPWMGIVKNRRKTGDHYWVNAYVTPILDQQRQVTGYESVRTKPT 120

Query: 120 RTAVRAAEALYARMRSGESRGVQLRRGVVVRTGVLGRL---QALMRLPVATRAALGYAIT 176
           R  V+ AEALY R+ SG+S   Q  R + V +  L  L   Q    +      ALG+   
Sbjct: 121 REQVQRAEALYERINSGKSGVPQSDRWLPVLSKWLPFLIISQLGFLVGAGFDHALGFIAA 180

Query: 177 PLALLLTGLAAWQGAPPAPFWIGFGVATAVSIASCLMLTRQLAAPVRDMSGFATRLAAGD 236
               +  GLA  Q       W   G+   + +AS       +A    D  G         
Sbjct: 181 AALAVPLGLAGLQ-------WQQRGLKRLLQLASQTTSDPLIARMYTDSRG--------- 224

Query: 237 LTADLQIARHDDLGDVLQALNQLKANLAAIVYDVRAQITGMLDN----AREISSGNVDLA 292
           + A L++A       +   L +L+        D   Q+ G        A+  ++G     
Sbjct: 225 VEAQLEMAMLSQQAHLKTCLTRLQ--------DTAVQLQGQAKQADSLAQSCANGLAQQN 276

Query: 293 RRTELQAASLEETAATMEELTTTVQANADATVRALDLAREAQAAAAVGGKIAGQVEQTMA 352
           + TE  A ++ E AAT +E+ + V   A+AT  A  L    +   A   K   Q+  ++A
Sbjct: 277 QETEQVATAINEMAATTQEVASNVALAAEATREASRLTIHGREVTAETRKAIQQLADSVA 336

Query: 353 GITAASRRIAD----ITGVID---GIAFQTNILALNAAVEAARAGEAGRSFAVVAGEVRM 405
               A  ++A+    I GV+D    IA QTN+LALNAA+EAARAG++GR FAVVA EVR 
Sbjct: 337 STGEAVNQLANDSDAIGGVVDVIKSIADQTNLLALNAAIEAARAGDSGRGFAVVADEVRQ 396

Query: 406 LAQRCAASSKEIKSVV--------------EASASEVAAGTELVARTTSQMRVIDEAVGR 451
           LAQR A ++ EI  ++              E    +   G + VA+    +  I+EA+G 
Sbjct: 397 LAQRTAEATGEIHQLIEKLQLQARHAVQTTEEGRVQATRGVDQVAQADQALTGINEAMGN 456

Query: 452 VSSIIVDVANASSEQAEGIRQVNQAVSHL-------DGATQQNAALVEQAAATAQ 499
           +  +   +A+A+ EQ+    +++  VS +        G  + +A L E  AATA+
Sbjct: 457 IIDMTTQIASATEEQSAVADEISNNVSTIARLADQTSGDARSSALLSEDLAATAE 511