Pairwise Alignments

Query, 566 a.a., methyl-accepting chemotaxis protein from Burkholderia phytofirmans PsJN

Subject, 516 a.a., PAS domain-containing protein from Rahnella sp. WP5

 Score =  375 bits (964), Expect = e-108
 Identities = 211/515 (40%), Positives = 309/515 (60%), Gaps = 6/515 (1%)

Query: 1   MRNNQPVTGHEYEFPSSHMLVSATDLTGRIQYCNPAFIAVSGFTRDELIGQPHNLIRHPD 60
           MR N P++  EY+      L+S TD+   I Y N AFI VSGF+ DEL  +PHNL+RHPD
Sbjct: 1   MRVNMPISQREYKLDPGTTLMSTTDVNSHIIYANSAFINVSGFSEDELTFRPHNLVRHPD 60

Query: 61  MPREAFADLWATIRDGRPWTALVKNRRKNGDHYWVHANVTPVVEKGAVVGYLSVRVKPER 120
           MP EAFAD+W T++ G  WT LVKNRRKNGDHYWV ANVTPV     + GY+SVR  P  
Sbjct: 61  MPVEAFADMWFTLQQGDSWTGLVKNRRKNGDHYWVRANVTPVYHLDKLTGYISVRNTPAE 120

Query: 121 TAVRAAEALYARMRSGESRGVQLRRGVVVRTGVLGRLQALMRLPVATRAALGYAITPLAL 180
             V+AAE LY +++   +   +  +G+V+ TG+   L  L +LPV+ R  L   I+ L  
Sbjct: 121 QEVKAAEELYKQVKEKSTGRRKFYKGLVIHTGLFSFLSLLQKLPVSWRLRLPLFISALFP 180

Query: 181 LLTGLAAWQGAPPAPFWIGFGVATAVSIASCLMLTRQLAAPVRDMSGFATRLAAGDLTAD 240
           LL  LA       A       V   + +A+ L L  Q+  P++ +   A ++ +G   A 
Sbjct: 181 LLFSLAGINLTESAI------VTVILLLAADLFLQSQIRNPIKTILAQAQQVVSGKKAAY 234

Query: 241 LQIARHDDLGDVLQALNQLKANLAAIVYDVRAQITGMLDNAREISSGNVDLARRTELQAA 300
           +   R D++G +++++NQ   NL ++V DV  Q+ G+   +  ++  +  L+ RTE  A 
Sbjct: 235 VHFNRVDEIGLLMRSVNQFGLNLHSLVEDVGTQVGGIAHISELMAKNSTALSARTEETAT 294

Query: 301 SLEETAATMEELTTTVQANADATVRALDLAREAQAAAAVGGKIAGQVEQTMAGITAASRR 360
            L++TAA +EE+T  V+ ++D  V+A  LA  A   A  GGKI  +    M  I+ AS +
Sbjct: 295 HLQQTAAAIEEITGAVEQSSDTVVQASKLADSATTVAQKGGKIMQETIGMMQSISHASSK 354

Query: 361 IADITGVIDGIAFQTNILALNAAVEAARAGEAGRSFAVVAGEVRMLAQRCAASSKEIKSV 420
           + DI  VID IAFQTNILALNAAVEAARAG  GR FAVVA EVR+LAQR A ++KEIK++
Sbjct: 355 VVDIISVIDSIAFQTNILALNAAVEAARAGTEGRGFAVVAAEVRVLAQRSATAAKEIKTL 414

Query: 421 VEASASEVAAGTELVARTTSQMRVIDEAVGRVSSIIVDVANASSEQAEGIRQVNQAVSHL 480
           +E +   V  G  +V     Q+  I   V ++S +I ++++A+ EQ   +  +N +++ +
Sbjct: 415 IETNMHSVETGGHMVENAGKQISEIIAEVVQMSGLIKEISHATHEQTSALTLINTSLAQI 474

Query: 481 DGATQQNAALVEQAAATAQRLAEQADVLDEAVRLF 515
           +  TQ NA +V Q++ +++RL  QA  L  A+ ++
Sbjct: 475 ETMTQNNAGMVAQSSESSERLNYQATRLRNAIDVY 509