Pairwise Alignments

Query, 566 a.a., methyl-accepting chemotaxis protein from Burkholderia phytofirmans PsJN

Subject, 515 a.a., PAS domain-containing protein from Rahnella sp. WP5

 Score =  394 bits (1013), Expect = e-114
 Identities = 225/519 (43%), Positives = 311/519 (59%), Gaps = 9/519 (1%)

Query: 1   MRNNQPVTGHEYEFPSSHMLVSATDLTGRIQYCNPAFIAVSGFTRDELIGQPHNLIRHPD 60
           MRNNQP++  EY++P    L+S TD   RI Y N AFI VSGF  +++IGQPHN++RHPD
Sbjct: 1   MRNNQPISQREYQYPDDATLMSTTDAESRITYANDAFIEVSGFASEDIIGQPHNVVRHPD 60

Query: 61  MPREAFADLWATIRDGRPWTALVKNRRKNGDHYWVHANVTPVVEKGAVVGYLSVRVKPER 120
           MP  AF D+WAT++ G PWTALVKNRR NGDHYWV ANV P++  G   GYLSVR KP  
Sbjct: 61  MPPSAFKDMWATLQQGFPWTALVKNRRSNGDHYWVRANVVPIIRGGKTKGYLSVRTKPTT 120

Query: 121 TAVRAAEALYARMRSGESRGVQLRRGVVVRTGVLGRLQALMRLPVATRAALGYAITPLAL 180
             + A +ALY +M  GE    +L RG+++RTG+      L  L V  R   G  +  L L
Sbjct: 121 AEINATQALYDKMNRGELNNRRLHRGLLIRTGITRSFSILKTLSVRWRIRNGLLVL-LVL 179

Query: 181 LLTGLAAWQGAPPAPFWIGFGVATAVSIASCLMLTR----QLAAPVRDMSGFATRLAAGD 236
               ++A    P     I    A A++    L+L      Q+  PV  +     R+A+G 
Sbjct: 180 NSLVISALTALPV----IQMNTALALNAFFILLLNFWMEWQITRPVEQLCSQTLRVASGA 235

Query: 237 LTADLQIARHDDLGDVLQALNQLKANLAAIVYDVRAQITGMLDNAREISSGNVDLARRTE 296
                 + R D++G  L+++ QL      +V DV  Q   +   +  +++GN  L++RTE
Sbjct: 236 SHTITPMERVDEIGMTLRSVGQLGLICRWMVDDVNDQAHKVRTASESLANGNEALSQRTE 295

Query: 297 LQAASLEETAATMEELTTTVQANADATVRALDLAREAQAAAAVGGKIAGQVEQTMAGITA 356
             AA++ +TAA M E++TTV++N      A  L+  A AAA  G     +V  TM  IT 
Sbjct: 296 QTAANVGQTAAAMNEMSTTVESNTQTAAEADKLSLIASAAAEKGSNAMQEVVGTMQEITG 355

Query: 357 ASRRIADITGVIDGIAFQTNILALNAAVEAARAGEAGRSFAVVAGEVRMLAQRCAASSKE 416
           +SR+IA IT VIDGIAFQTNILALNAAVEAARAGE G+ FAVVAGEVR LAQR A+++ E
Sbjct: 356 SSRQIATITNVIDGIAFQTNILALNAAVEAARAGEQGKGFAVVAGEVRSLAQRSASAASE 415

Query: 417 IKSVVEASASEVAAGTELVARTTSQMRVIDEAVGRVSSIIVDVANASSEQAEGIRQVNQA 476
           IK ++++S   V +G++ V +    M  I   V  V+S+I  + +A+ EQ +G+  + +A
Sbjct: 416 IKRLIDSSVETVVSGSKQVDQAGKTMADIVSQVRNVTSLIGQIRSATGEQNQGLLDIAKA 475

Query: 477 VSHLDGATQQNAALVEQAAATAQRLAEQADVLDEAVRLF 515
           +  LD  T QN+  V++ A  +  L +QAD L EAV +F
Sbjct: 476 IEELDRITHQNSIQVQEGANASSGLKQQADRLVEAVGVF 514