Pairwise Alignments

Query, 1169 a.a., histidine kinase from Burkholderia phytofirmans PsJN

Subject, 933 a.a., hybrid sensory histidine kinase BarA (RefSeq) from Shewanella loihica PV-4

 Score =  208 bits (530), Expect = 1e-57
 Identities = 166/627 (26%), Positives = 272/627 (43%), Gaps = 61/627 (9%)

Query: 545  QLRHAQQTSEALMRARTNFFAAMSHEIRTPLNALLGNLELFARTPGLEAHSQRLATLDLA 604
            +L  A++ +    R ++ F A MSHE+RTPLN ++G  +   +TP   +    + T++ +
Sbjct: 288  ELDLAKKRALEASRIKSEFLANMSHELRTPLNGVIGFAKQLLKTPLHASQQDYIKTIEKS 347

Query: 605  ADALRRVVNDILDFSKIDAGEMLLVREPFLLIDVFENIALSYAPMHGERSIRFYALLSPT 664
            A  L  ++NDILDFSK++AG+M L   PF L +V ++     A    E+ +     + P+
Sbjct: 348  ATNLLGIINDILDFSKLEAGKMELENMPFALREVIDDTISLLANSAKEKDLELVVDIEPS 407

Query: 665  LDQTLIGDRMRISQIVNNLLSNAFKFTSTGKITLRAEVTDDSPDRAMLTIRVSDSGAGMN 724
            ++  + GD +R+SQ++ NL+ NA KFT +G + L+  +T +  ++  +   ++D+G G++
Sbjct: 408  INDNVSGDALRVSQVITNLVGNAIKFTDSGSVHLKMRLTSEEAEKVNVRCEITDTGIGID 467

Query: 725  EETLARLFKPFAQGELGASHGAGGTGLGLAICARLCELMGGHIVAESVPSVGSAFRISIP 784
            +   A+LF+ F Q +   S   GGTGLGL I  RL   MGG I   S P  GS F  ++P
Sbjct: 468  KPHQAQLFQAFGQADSSISRRFGGTGLGLIITKRLINRMGGQIGCISAPGKGSTFWFTLP 527

Query: 785  LAKPPVDSRAPAKARKQRGIVLVLSMEREAG-----EIMEHW-------------LHHAG 826
            L   P     P +        ++L   RE        ++ HW                AG
Sbjct: 528  LKLSPYPISQPLETDNLIDKTVLLFEPRELSRKVHESLLSHWGMQNISITTAEDLARVAG 587

Query: 827  WAGH-----LVTLPDAAQAWLRLNRADAVVVSGEYGL------DVIAALRALQPVGVVWI 875
              G      +++  D A +   LN  + +    +Y L      D  A +  +QP      
Sbjct: 588  EEGRHFDYAIISCNDLASSPNLLNVLNKIAKISDYTLYLCSSTDSAAKMSLIQP------ 641

Query: 876  TRAGPLHPEARGEGVLEVTEFS-RTAVQSAIELAHETKSTTAVPTAARSESGPAGIHPTL 934
                 +     GE  L VT  +   A   A+      K T         E  P       
Sbjct: 642  -NVDKVMQAPVGERALAVTLINPHRAQYEAMPFQEAVKET--------QEREP------- 685

Query: 935  RGLPVLVAEDNPLIQNLIAEQLVELGCVPTIAHDGEHALKLFEETPFELVLTDIHMPEMD 994
              + VL  +DNP    LI   L EL    T+  +G+ A+++ +   F+L+  DI MP  D
Sbjct: 686  --MSVLAVDDNPANLKLIKTLLKELVTQVTVTDNGQEAVEIAKAKSFDLIFMDIQMPGTD 743

Query: 995  GYQLLAALRK--LQATVRVLAFSAVAEHEEAHNWRERGFSGYVAKPASLRELQAALLEAA 1052
            G+     +R+  L     ++A +A A  EE     + G  GY+ KP     L++ +    
Sbjct: 744  GFSATKQIREHSLNRNTPIVAVTAHAIAEERERIDQSGMDGYLPKPIDEAALKSVISRWK 803

Query: 1053 PQSVATAEPMSSAAAGSALS-TDDKARYTAMLKQHLQKDLP----RLLAIVEEEDVQALA 1107
             +   T     +      L+  + K      + Q L   LP     +   +E +D QA+ 
Sbjct: 804  TRPQFTHFDQHTLNWDLCLTQANQKTSLALEMLQMLVDSLPETREHISGALERQDSQAMV 863

Query: 1108 GWAHSASGAFVVVQEPRFVEQCRRLQR 1134
               H   GA      P     CR +++
Sbjct: 864  SHVHKLHGASCYCGVPTTQRLCREIEQ 890