Pairwise Alignments

Query, 1154 a.a., alpha-amylase from Burkholderia phytofirmans PsJN

Subject, 541 a.a., alpha amylase, catalytic region (RefSeq) from Shewanella loihica PV-4

 Score =  252 bits (644), Expect = 5e-71
 Identities = 178/548 (32%), Positives = 264/548 (48%), Gaps = 102/548 (18%)

Query: 42  WYKDAIIYQVHIKSFFDANNDGVGDFPGLIAKLDYIAELGVNAIWLLPFYPSPRRDDGYD 101
           W++ A+IYQ++ +S  D+N DGVGD  G+I+KLDYIA L V+AIW+ PF+ SP +D GYD
Sbjct: 6   WWRGAVIYQIYPRSLMDSNGDGVGDLQGIISKLDYIASLNVDAIWISPFFKSPMKDFGYD 65

Query: 102 IADYRNVHPDYGNLSDVKRFIQEAHARGIRVITELVINHTSDQHPWFQRARRAKPGSNHR 161
           I+DYR + P +G ++D    I +AH  GI+VI + V++HTSDQH WF  +R+++  +  +
Sbjct: 66  ISDYRAIDPLFGTMADFDELIDKAHGLGIKVIIDQVLSHTSDQHAWFSESRQSRDNAK-Q 124

Query: 162 NYYVWSDTDQKYQETRIIFIDSEPSNWTHDPVAGAYYWHRFYSHQPDLNFDNPAVLKEVL 221
           ++YVW+D +                 W  +P    YY H F + QPDLNF NP V + VL
Sbjct: 125 DWYVWADPNPDGTAPNNWLAIFGGCAWEWEPRRQQYYLHNFLTSQPDLNFHNPDVRQAVL 184

Query: 222 QVMRFWLDMGIDGLRLDAVPYLV--------------EREGTN--------------NEN 253
             ++FWLD G+DG RLDA+ +                +R+G                N  
Sbjct: 185 DNVKFWLDKGVDGFRLDAITFCYHDEQLRDNPPKPEDKRQGRGFSEDNPYAYQYHYYNNT 244

Query: 254 LPETHAVLKKIRATIDAEYPNRMLLAEANQWPED----VKEYFGDEDECHMAFHFPLMPR 309
            P+T   ++++RA I+ +YP  + L E +   ED    + EY   +D  HMA+ F L+  
Sbjct: 245 RPQTVGFIEELRALIN-QYPGVVTLGEVSS--EDSLATMAEYTQGDDRLHMAYSFELL-- 299

Query: 310 IYMSIASEDRFPITDIMRQTPDLAATNQWAIFLRNHDELTLEMVTDSERDYLWNTYASDR 369
                 ++D  P                   ++R+  E   + + D      W  +A   
Sbjct: 300 ------TDDFSP------------------AYIRHTVEALEQSIGDG-----WPCWAIGN 330

Query: 370 RARLNLGIRRRLAPLMERD---RRRIELINSLLLSMPGTPVIYYGDELGMGD----NIHL 422
                    +R+A    RD       +++N++L S+ G+   Y G+ELG+G+       L
Sbjct: 331 HD------VQRVATRWGRDAFNSDMAKMLNAMLCSLRGSVCSYQGEELGLGEVEIAYEQL 384

Query: 423 GD------------RDGVRTPMQWSSDRN-GGFSRADPEQLVLPPVMGSLYGFDAVNVEA 469
            D            RDG RTPM W  D N  GFS   P  L +P          AV V+ 
Sbjct: 385 QDPFGITFWPMFKGRDGCRTPMPWRHDANHAGFSDNTP-WLPVPA------DHKAVAVDV 437

Query: 470 QSRDPHSLLNWTRRMLATRRAKQTFGRGTIRFLKPENRKILAYLREMPGEPPILCVANLS 529
           Q  +P S+LN  R MLA R+       G I+F+  E+   L       GE  +L   NLS
Sbjct: 438 QEANPESILNHYRHMLAWRKLHPILVTGDIKFI--ESTDALLVFERRLGEQTLLVAFNLS 495

Query: 530 RAPQAVEL 537
             PQ+  L
Sbjct: 496 GQPQSFSL 503