Pairwise Alignments

Query, 665 a.a., RNA polymerase sigma factor RpoD from Burkholderia phytofirmans PsJN

Subject, 662 a.a., RNA polymerase sigma factor RpoD from Phaeobacter inhibens DSM 17395

 Score =  467 bits (1201), Expect = e-136
 Identities = 270/654 (41%), Positives = 396/654 (60%), Gaps = 37/654 (5%)

Query: 42  PPQQAEERQRQMRALIQLGKEQGYLTHAQINDHLPDNFAQTAAIDSIVSAFNDMGVQVYE 101
           P    +  Q Q++ +I   +E+GY+T+ Q+N  LP +   +  I+ ++S  ++MG+ + E
Sbjct: 16  PEISLDMSQTQVKKMIAEAREKGYITYDQLNQVLPPDQVSSEQIEDVMSMLSEMGINIIE 75

Query: 102 QAPDAETLLLNSNAPAVVSDDQADEETEVALSTVDSEFGRTTDPVRMYMREMGATELLTR 161
              D E           +   +++ E  VA +  + +  RT DPVRMY+REMG+ ELL+R
Sbjct: 76  ---DEEAEEEEQKGSTELVTTESNREVAVAGAAAE-KLDRTDDPVRMYLREMGSVELLSR 131

Query: 162 AGEIAIAKRIEDGLHEMVQAIAACPLAISAILASAQQVADGELRIDELVD-------GLN 214
            GEIAIAKRIE G + M+  +   PL   AI     ++   ++ + +++D        L+
Sbjct: 132 EGEIAIAKRIEAGRNTMIAGLCESPLTFQAITIWHDELLSEDILLRDVIDLEATFGNQLD 191

Query: 215 ED----------TLAAEEDSTGADASADVDADTD---SDDDEDSDDDVGPADSSAADEAR 261
           ED          +  A       +   ++DAD +    DDD+D DD      S AA EA 
Sbjct: 192 EDGEVSEPVVDTSAVAANKPAAKETGPELDADGNPIAQDDDDDEDDQANM--SLAAMEAA 249

Query: 262 LKQLTSDCLEI----FAQVGMLSDQMNASHTRGDVTSKA-----YQRAREEIQQHLAKIR 312
           LK      LE     +AQ+  + D   ++    D +  A     YQ  R EI   + ++ 
Sbjct: 250 LKDKVLTTLEQISSDYAQLSEMQDSRISATLNEDGSFSARDEQVYQSLRAEIVLLVNELH 309

Query: 313 FTARTIDRLCGDVQQQVAQVRAIERNILQIVVSKSGMPREKFIESFAGHEADLGW-TERA 371
                I+ L   +     +V +I+ +++++   ++ + R +F+E++ G E D  W ++  
Sbjct: 310 LHNNRIEALIDQLYGINRRVMSIDSSMVKLA-DQARINRREFVEAYRGRELDPNWLSDMG 368

Query: 372 ARGASSYGAALERHLPAIQSEQQKLIEIEATVSLPLKHLKEINRQMVAAESKMRKAKSEM 431
            +    +   +ER    I+  +  + ++   V L +   + I +Q+   E + R+AK EM
Sbjct: 369 DKPGRGWQMFVERSTDKIEELRADMAQVGQYVGLDISEFRRIVQQVQKGEKEARQAKKEM 428

Query: 432 IEANLRLVISIAKKYVNRGMLFLDLIQEGNIGLMKAVDKFEYRRGWKFSTYATWWVRQAV 491
           +EANLRLVISIAKKY NRG+ FLDLIQEGNIGLMKAVDKFEYRRG+KFSTYATWW+RQA+
Sbjct: 429 VEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAI 488

Query: 492 TRSLADQARTIRVPVHMIETINKLNRISREILQQTGQEAHPSVLAERMELSEEKVRGILK 551
           TRS+ADQARTIR+PVHMIETINKL R  R++L + G+E  P  LAE++++  EKVR ++K
Sbjct: 489 TRSIADQARTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAEKLQMPLEKVRKVMK 548

Query: 552 IAKQPVSMETPVGDDGDATLGDMIEDSAASSPADAAMQADLRAAIDDALDSLSPREAKVL 611
           IAK+P+S+ETP+GD+ D+ LGD IED  A  P D+A+Q +L+      L SL+PRE +VL
Sbjct: 549 IAKEPISLETPIGDEEDSQLGDFIEDKNAVLPLDSAIQENLKETTTRVLASLTPREERVL 608

Query: 612 RMRYGINTKSDHTLEEVGKQFDVTRERIRQIESKAMRKLMHPSRADRLKSFLDR 665
           RMR+GI   +DHTLEEVG+QF VTRERIRQIE+KA+RKL HPSR+ +L+SFLD+
Sbjct: 609 RMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLDQ 662