Pairwise Alignments

Query, 665 a.a., RNA polymerase sigma factor RpoD from Burkholderia phytofirmans PsJN

Subject, 590 a.a., RNA polymerase, sigma 70 subunit, RpoD subfamily (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  395 bits (1016), Expect = e-114
 Identities = 243/628 (38%), Positives = 361/628 (57%), Gaps = 60/628 (9%)

Query: 51  RQMRALIQLGKEQGYLTHAQINDHLPDNFAQTAAIDSIVSAFNDMGVQVYEQAPDAETLL 110
           +Q+++LI  GK  G+LT  ++N  LP        I+ I+  F+ + + + +   D + + 
Sbjct: 8   QQIKSLIAKGKVSGFLTFDEVNKALPAEVNTPEQIEEIIGIFDQLEIAIVDTEKDGKKIS 67

Query: 111 LNSNAPAVVSDDQADEET--EVALSTVDSE-----FGRTTDPVRMYMREMGATELLTRAG 163
                   VS  +++EE   E  L  V+ E       R+TDPVRMY+REMGA  LL R G
Sbjct: 68  --------VSPGESEEEPSGEPGLDLVEDEESADYSSRSTDPVRMYLREMGAVPLLDRDG 119

Query: 164 EIAIAKRIEDGLHEMVQAIAACPLAISAILASAQQVADGELRIDELVDGLNEDTLAAEED 223
           E+ IAK+IE G  +++ A+   P+A+  ++   + +    +++ ++V  + ED       
Sbjct: 120 EVQIAKKIELGEQDVLYALVEVPVAVEELINVGEDLKQNRIKLKDVVKTIEED------- 172

Query: 224 STGADASADVDADTDSDDDEDSDDDVGPADSSAADEARLKQLTSDCLEIFAQVGMLSDQM 283
                              + S+D++            +K       +++A++    D  
Sbjct: 173 -------------------DPSEDEMNQRSRVILLLDEIKHTYKKKRKVYAKL----DDC 209

Query: 284 NASHTRGDVTSKAYQRAREEIQQHLAKIRFTARTIDRLCGDVQQQVAQVRAIERNILQIV 343
                R     K     +E+I   L  I+     IDR+   V+  V Q+   +R++   +
Sbjct: 210 CTLERRVTAIQKEILGFKEDIVNRLRDIKLEKTLIDRIIETVEDYVRQMHNCQRDLSAYI 269

Query: 344 VSKSGMPREKFIESFAGHEADLGWTERAARGASSYGAALERHLPAIQSEQQKLI-EIEAT 402
           +S +G  + +  + F   EA     E     AS   AAL   +  + S ++ +I +IE  
Sbjct: 270 LS-TGKTQVEIQDIFRMLEA----REMNPVAAS---AALGMTVEELFSFKEMIIGKIEIL 321

Query: 403 VSLPLK------HLKEINRQMVAAESKMRKAKSEMIEANLRLVISIAKKYVNRGMLFLDL 456
             L  K       L+E+  ++    +   +AK E+I +NLRLV+SIAKKY NRG+ FLDL
Sbjct: 322 NRLQDKCCHNVTDLEEVLWRIKRGNTHAMRAKQELIRSNLRLVVSIAKKYTNRGLQFLDL 381

Query: 457 IQEGNIGLMKAVDKFEYRRGWKFSTYATWWVRQAVTRSLADQARTIRVPVHMIETINKLN 516
           IQEGNIGLMKAVDKFEY+RG+KFSTYATWW+RQA+TR++ADQARTIR+PVHMIETINKL 
Sbjct: 382 IQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLI 441

Query: 517 RISREILQQTGQEAHPSVLAERMELSEEKVRGILKIAKQPVSMETPVGDDGDATLGDMIE 576
           R SR ++Q+ G++  P  +AERM+   +KV+ +LKIAK+P+S+ETP+GD+ D++LGD IE
Sbjct: 442 RTSRYLVQELGRDPTPEEIAERMDYPIDKVKKVLKIAKEPISLETPIGDEEDSSLGDFIE 501

Query: 577 DSAASSPADAAMQADLRAAIDDALDSLSPREAKVLRMRYGINTKSDHTLEEVGKQFDVTR 636
           D  A +PA+  +   L   I   L  L+PRE +VLR R+GI  KSDHTLEEVGK F+VTR
Sbjct: 502 DKKAVAPAEEVVNTKLSEQIASVLADLTPREEQVLRKRFGIGEKSDHTLEEVGKLFNVTR 561

Query: 637 ERIRQIESKAMRKLMHPSRADRLKSFLD 664
           ERIRQIE+KA+RKL HP R+  L+S+ +
Sbjct: 562 ERIRQIEAKALRKLRHPVRSQMLRSYYE 589