Pairwise Alignments

Query, 665 a.a., RNA polymerase sigma factor RpoD from Burkholderia phytofirmans PsJN

Subject, 616 a.a., RNA polymerase sigma-70 factor (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  582 bits (1501), Expect = e-170
 Identities = 307/621 (49%), Positives = 415/621 (66%), Gaps = 17/621 (2%)

Query: 50  QRQMRALIQLGKEQGYLTHAQINDHLPDNFAQTAAIDSIVSAFNDMGVQVYEQAPDAETL 109
           Q Q++ L+  GKEQGYLT+A++NDHLP +   +  I+ I+   NDMG++V+E+APDA+ +
Sbjct: 6   QSQLKLLLAKGKEQGYLTYAEVNDHLPADMVDSDQIEDIIQMINDMGIRVFEEAPDADDM 65

Query: 110 LLNSNAPAVVSDDQADEETEVALSTVDSEFGRTTDPVRMYMREMGATELLTRAGEIAIAK 169
           +++ +     +D+ A EE   AL+TV+SE GRTTDPVRMYMREMG  ELLTR GEI IAK
Sbjct: 66  MMSEDN----TDEDAAEEAAAALATVESELGRTTDPVRMYMREMGTVELLTREGEIVIAK 121

Query: 170 RIEDGLHEMVQAIAACPLAISAILASAQQVADGELRIDELVDGL---NEDTLAAEEDSTG 226
           RIE+G++ +  ++A  P AI+ IL    Q    ELR+ +++ G    +E+ L       G
Sbjct: 122 RIEEGINTVQSSVAEYPQAIAMILEQYDQYEADELRLSDIISGFVNPDEEDLGPTATHIG 181

Query: 227 ADASA-DVDADTDSDDDEDSDDDVGPAD--SSAADEARLKQLTSDCLEIFAQVGMLSDQM 283
           ++ S  D++ + D +DDED D D    D  +   D    ++  S     +     + D  
Sbjct: 182 SELSEEDLEDEDDEEDDEDEDGDGDGDDDGNKGPDPEEARERFSQLRTAYESALKIIDAK 241

Query: 284 NASHTRGDVTSKAYQRAREEIQQHLAKIRFTARTIDRLCGDVQQQVAQVRAIERNILQIV 343
              H           +A  EI +   + R   +  DRL   ++  + +VR  ER ++++ 
Sbjct: 242 GREHPESI-------QALFEIGEIFKEFRLVPKQFDRLVKSMRSMMDRVRVQERLLMKLC 294

Query: 344 VSKSGMPREKFIESFAGHEADLGWTERAARGASSYGAALERHLPAIQSEQQKLIEIEATV 403
           V ++ MP++ F++ F G+E +L W E        Y   L      +Q  + KL  IE   
Sbjct: 295 VEQAKMPKKNFVKFFTGNETNLDWFEAEKTSNKPYAEGLRMVEEDVQRCRSKLAAIEEET 354

Query: 404 SLPLKHLKEINRQMVAAESKMRKAKSEMIEANLRLVISIAKKYVNRGMLFLDLIQEGNIG 463
            L +  +K+INR+M   E+K R+AK EM+EANLRLVISIAKKY NRG+ FLDLIQEGNIG
Sbjct: 355 GLVIAAIKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIG 414

Query: 464 LMKAVDKFEYRRGWKFSTYATWWVRQAVTRSLADQARTIRVPVHMIETINKLNRISREIL 523
           LMKAVDKFEYRRG+KFSTYATWW+RQA+TRS+ADQARTIR+PVHMIETINKLNRISR++L
Sbjct: 415 LMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQML 474

Query: 524 QQTGQEAHPSVLAERMELSEEKVRGILKIAKQPVSMETPVGDDGDATLGDMIEDSAASSP 583
           Q+ G+E  P  LAERM + E+K+R +LKIAK+P+SMETP+GDD D+ LGD IED+    P
Sbjct: 475 QEMGREPSPEELAERMMMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELP 534

Query: 584 ADAAMQADLRAAIDDALDSLSPREAKVLRMRYGINTKSDHTLEEVGKQFDVTRERIRQIE 643
            D+A    L++A  + L  L+ REAKVLRMR+GI+  +DHTLEEVGKQFDVTRERIRQIE
Sbjct: 535 LDSATSESLKSATHEVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIE 594

Query: 644 SKAMRKLMHPSRADRLKSFLD 664
           +KA+RKL HPSR++ LKSFLD
Sbjct: 595 AKALRKLRHPSRSEILKSFLD 615