Pairwise Alignments

Query, 665 a.a., RNA polymerase sigma factor RpoD from Burkholderia phytofirmans PsJN

Subject, 590 a.a., RNA polymerase sigma-70 factor (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  401 bits (1031), Expect = e-116
 Identities = 232/619 (37%), Positives = 357/619 (57%), Gaps = 42/619 (6%)

Query: 51  RQMRALIQLGKEQGYLTHAQINDHLPDNFAQTAAIDSIVSAFNDMGVQVYEQAPDAETLL 110
           +Q+++LI  GK  G+LT  ++N  LP        I+ I+  F+ + + + +   D + + 
Sbjct: 8   QQIKSLIAKGKVSGFLTFDEVNKALPAEVNTPEQIEEIIGIFDQLDIAIVDSEKDGKKIS 67

Query: 111 LN-----SNAPAVVSDDQADEETEVALSTVDSEFGRTTDPVRMYMREMGATELLTRAGEI 165
           ++       AP+    D +D+E  V  S+      R+TDPVRMY+REMG+  LL R GE+
Sbjct: 68  MSPGESEEEAPSEGGLDLSDDEETVDYSS------RSTDPVRMYLREMGSVPLLDRDGEV 121

Query: 166 AIAKRIEDGLHEMVQAIAACPLAISAILASAQQVADGELRIDELVDGLNEDTLAAEEDST 225
            IAK+IE G  +++ A+   P+A+  ++   + +    +++ ++V  + ED         
Sbjct: 122 VIAKKIEMGEQDVLYALVEVPVAVEELVNVGEDLKQNRIKLKDVVKTIEED--------- 172

Query: 226 GADASADVDADTDSDDDEDSDDDVGPADSSAADEARLKQLTSDCLEIFAQVGMLSDQMNA 285
                            + S+D++            ++       ++++++    D+   
Sbjct: 173 -----------------DPSEDEMNQRQRVILLLEEIRTTFKKKRKVYSKL----DECCT 211

Query: 286 SHTRGDVTSKAYQRAREEIQQHLAKIRFTARTIDRLCGDVQQQVAQVRAIERNILQIVVS 345
              R     +     +E+I   L  I+     IDR+   V+  V Q+   +R++   ++S
Sbjct: 212 LERRVASVQREIMNYKEDIVSRLRDIKLEKTLIDRIIETVEDYVRQMHNCQRDLSAYILS 271

Query: 346 KSGMPREKFIESFAGHEADLGWTERAARGASSYGAALERHLPAIQSEQQKLIEIEATVSL 405
            +G  + +    F+G EA       A+   +     L      I  + + L  ++     
Sbjct: 272 -TGKTQAEIQALFSGLEAREVSPVAASAALNMTVEELFSFKEMILGKIEILSRLQDKCCH 330

Query: 406 PLKHLKEINRQMVAAESKMRKAKSEMIEANLRLVISIAKKYVNRGMLFLDLIQEGNIGLM 465
            +  L+E+  ++    S   +AK E+I +NLRLV+SIAKKY NRG+ FLDLIQEGNIGLM
Sbjct: 331 NVNDLEEVLWRIKRGNSIAMRAKQELIRSNLRLVVSIAKKYTNRGLQFLDLIQEGNIGLM 390

Query: 466 KAVDKFEYRRGWKFSTYATWWVRQAVTRSLADQARTIRVPVHMIETINKLNRISREILQQ 525
           KAVDKFEY+RG+KFSTYATWW+RQA+TR++ADQARTIR+PVHMIETINKL R SR ++Q+
Sbjct: 391 KAVDKFEYQRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRYLVQE 450

Query: 526 TGQEAHPSVLAERMELSEEKVRGILKIAKQPVSMETPVGDDGDATLGDMIEDSAASSPAD 585
            G++  P  +AERM+   +KV+ +LKIAK+P+S+ETP+GD+ D++LGD IED  A +PA+
Sbjct: 451 LGRDPTPEEIAERMDYPIDKVKKVLKIAKEPISLETPIGDEEDSSLGDFIEDKKAVAPAE 510

Query: 586 AAMQADLRAAIDDALDSLSPREAKVLRMRYGINTKSDHTLEEVGKQFDVTRERIRQIESK 645
             +   L   I   L  L+PRE +VLR R+GI  KSDHTLEEVGK F+VTRERIRQIE+K
Sbjct: 511 EVVNTKLGEQIASVLADLTPREEQVLRKRFGIGEKSDHTLEEVGKLFNVTRERIRQIEAK 570

Query: 646 AMRKLMHPSRADRLKSFLD 664
           A+RKL HP R+  L+S+ +
Sbjct: 571 ALRKLRHPVRSQTLRSYYE 589