Pairwise Alignments

Query, 583 a.a., type IV secretory pathway protein VirD4 from Burkholderia phytofirmans PsJN

Subject, 565 a.a., Type IV secretion system protein VirD4 from Xanthomonas campestris pv. campestris strain 8004

 Score =  427 bits (1098), Expect = e-124
 Identities = 230/452 (50%), Positives = 314/452 (69%), Gaps = 10/452 (2%)

Query: 12  IVVGIWRGRYLRFTGQQFVLLAAPARSGKGVSIVIPNLLSYPDSVVVLDIKRENYAITAG 71
           IVVG   G+ +R  GQQFV+LAAP RSGKGV IVIPNLL Y  SVVVLDIK+EN+ +T+G
Sbjct: 118 IVVGKHGGKLVRLPGQQFVILAAPTRSGKGVGIVIPNLLDYQGSVVVLDIKQENFDLTSG 177

Query: 72  FRLAHGQEVYLFDPFAEDGRTHRFNPLSSIS-DGLFRVGDILAIGYALYPPNGHD--DFW 128
           +R + GQEV+LF+PFAEDGRTHR+NPLS IS D  FRV D++++   LYP +G D   FW
Sbjct: 178 WRKSQGQEVFLFNPFAEDGRTHRWNPLSYISPDPAFRVSDLMSVAAMLYP-DGSDAQKFW 236

Query: 129 KDQARNLFLGIVLLLSEWRDARRTGRGESIPDYPVTMGEVLRQSSGHGMPVKAYLQRALV 188
             QARN F+   L L +  D +   +         T+G + R SSG G  +K YL++  +
Sbjct: 237 VSQARNAFMAFTLYLFDSLDDQIKRKHPKETWMFPTLGMLYRVSSGDGSDLKGYLKK--L 294

Query: 189 QHRALLSGACVDALNRFLSNDDKVLASILATFHAPLTIWANPIVDAATSANDFDLRDVRR 248
             R  L      A +  LS  ++  ASI+ TF  PL  + NPI+DA+TS NDF L DVR+
Sbjct: 295 SQREFLGRDAKTAFDNLLSQAEETFASIMGTFKEPLNQFINPILDASTSDNDFLLTDVRK 354

Query: 249 RRMSVYIGITPDHLSEAALLVNLVFSQLVNLNTKQLPEADPTLRFQCLLLLDEMTAIGKI 308
           ++MS+YIGI P+ L+E+ LL+NL+FSQL+NLNTK+LP+ +P L+ QCLLL+DE T+IG++
Sbjct: 355 KKMSIYIGIQPNKLAESRLLINLLFSQLINLNTKELPQNNPALKHQCLLLMDEFTSIGRV 414

Query: 309 HIIARAVAYMAGYNLRLLSVVQSIAQLESVYGRSDARTFLTNHAMQILYAPREQKDANDY 368
            IIA AV+YMAGYN+RLL ++QS+AQL++ YG+  +RT +TNHA+QI+YAPREQ+DANDY
Sbjct: 415 DIIASAVSYMAGYNIRLLPIIQSMAQLDATYGKDVSRTIITNHALQIVYAPREQQDANDY 474

Query: 369 SEMLGTFTDQSRSVSRPNTMFGGRGGSSESMSEQRRPLLLPQELKELGRDKEIIVLEN-T 427
           S+MLG  T + ++ S  +   G +   S S +EQRR L+LPQELK +G DKE+ + E   
Sbjct: 475 SDMLGYTTVRKKNKSHTS---GKQSSVSYSETEQRRALMLPQELKAMGFDKEVFLYEGIP 531

Query: 428 KPILADRICYWRDPVFASRVSIAPSVPAMDLA 459
            P+L ++I Y+ D  F  R+     + A+ +A
Sbjct: 532 SPVLCEKIKYYEDAYFTKRLLPKVKIEALQMA 563