Pairwise Alignments

Query, 663 a.a., Fis family transcriptional regulator from Burkholderia phytofirmans PsJN

Subject, 634 a.a., two component, sigma54 specific, transcriptional regulator, Fis family from Marinobacter adhaerens HP15

 Score =  298 bits (764), Expect = 4e-85
 Identities = 218/665 (32%), Positives = 334/665 (50%), Gaps = 74/665 (11%)

Query: 11  RPRIWAVSISRLRDLFFDIAGEYVERADLRIVSHGFEDAVR------EIDAAGAGRPDVV 64
           R ++  +  S+L  +   +  E+   A++ I+   F DA+       E DA      DV 
Sbjct: 11  RVKLCLIGNSKLSKMVHSLIPEFQSIAEIVIIDSIFNDALMSARRLVEHDAV-----DVF 65

Query: 65  IAGGSNGAYLKTRVSVPVVLIGPTGFDVMHALARARRDGAKVALVT--HGNTPDEVRRFV 122
           I+ G+N  YLK  + VPVV +     D+++A+ +AR+   K+ L+T  H +T  E   +V
Sbjct: 66  ISAGANAHYLKDTLPVPVVALELRQSDLVNAVLKARQISNKILLLTYEHQSTWTEFLDYV 125

Query: 123 AAYALDVTFASYQSAQHAESVVLDLRDRGIDVVVGPGMVTDLAANAGMGAVFLYSRASVR 182
               +D+   +Y++A+ A      +   GI VV+G   + DLA   G+  V +YSR S R
Sbjct: 126 EG--VDIVHRTYKTAEEARETFHGVEKDGIGVVIGSSFICDLAEQEGLPFVMVYSRESCR 183

Query: 183 AAFDTALEVAQATRRETIRRQRLDNLLQHLRDGVVALDAQGRVEAMNQRLAGVL-GLEAA 241
                A+ VA   +RE  RR  +  L+       +  +   ++   N+   G++ GL   
Sbjct: 184 YMVRKAISVAGEHKREGERRAFVQFLMDSASSPTIITNRDEQIIGFNRSALGLVKGLARN 243

Query: 242 KAVGRVL----LELAPDLAGSLPDADGDALCTVRGVSYVVHR---GPLASSSAAAGTVLT 294
           K + R L    L+    +A  +    GD LC V+  ++ V     G L + +AA  +   
Sbjct: 244 KRIDRFLDSRFLQTPDTVAEGIQV--GDRLCRVQKSAFEVDGVRVGHLYALTAAPQS--- 298

Query: 295 FQESRAVERLDRTLRSRQRVQQFSARYRLDDIVGASDSIERVRALVRRYARSDATVLILG 354
                                +  +  +   ++  S  +  V   ++ Y  +   VL+ G
Sbjct: 299 ---------------------KSGSEGKTSGLIYESGRMAEVAHFLQVYGATPGAVLLRG 337

Query: 355 ESGTGKEMVAQSMHQLSPRRDFAFVAINCGAFPEALLESELFGYEEGAFTGARKGGKAGL 414
           E+GTGKE+ A+ +H  S  ++  FVAINC A P  L ESELFGY +GAFT +R GGK+GL
Sbjct: 338 ETGTGKELAARMIHDSSANKEGPFVAINCAAIPSELFESELFGYADGAFTSSRSGGKSGL 397

Query: 415 IEVAHRGTLFLDEIGEMPLSLQSRLLRVLQEREVVRLGSTEPTRVDIRVVAATHRALTEG 474
           +E A+ GT F+DEI  +PL  Q++LLRVLQEREV  +GS     ++I+ VAA +  L E 
Sbjct: 398 LETANNGTFFMDEINSLPLPQQAKLLRVLQEREVRPVGSRRSIALNIKFVAACNHDLLEE 457

Query: 475 IEAGSFRADLYYRLNILSIALPPLRERPTDLLPLAVELLLQAAAREPRLAARLPDAAAAE 534
           + AG FR DLYYRLN+  + LPPLRERP D+ PL     +Q+  R+  + A   + A AE
Sbjct: 458 VRAGRFREDLYYRLNVFIVNLPPLRERPDDIEPL-TRHFIQSLGRQYGIDA--DENALAE 514

Query: 535 RLLATLAEPLKRYAWPGNVRELQNVIERIAVELADVDVDADANADVGAISAGAAAPVLTR 594
                L    +RY WPGNVR+L+N++ER+ V                  S   ++     
Sbjct: 515 ----VLVPRFRRYGWPGNVRQLENLMERLLVS-----------------STLYSSTEQFA 553

Query: 595 DMLRTVAPEIVEPHARTKKAALTLRERSRHVEADEIRAALAAHDGDRDAVCEALGISKTT 654
             L+++APE+ E      ++ LT     + VE +EI   L    G++    E LGIS+TT
Sbjct: 554 SHLQSLAPELFE-LTDLGQSGLTEGCHLQSVEQEEILKVLGRFGGNKTKAAEYLGISQTT 612

Query: 655 LWRKL 659
           LWR+L
Sbjct: 613 LWRRL 617