Pairwise Alignments

Query, 381 a.a., DNA-directed DNA polymerase from Burkholderia phytofirmans PsJN

Subject, 360 a.a., DNA polymerase IV from Vibrio cholerae E7946 ATCC 55056

 Score =  169 bits (427), Expect = 1e-46
 Identities = 112/359 (31%), Positives = 180/359 (50%), Gaps = 31/359 (8%)

Query: 5   RRIAHIDMDAFFASCELSQYPELRGQAMVVAGRRSDAPRVNADGTREFARLRDYAGRGVL 64
           R+I H+DMD FFA+ E+   P  R  A+ V G                        RGV+
Sbjct: 6   RKIIHVDMDCFFAAVEMRDNPAYREIALAVGGHEKQ--------------------RGVI 45

Query: 65  TTATYEARAFGVHSGMPTMQAARLAPDAILLPVNFDLYRTYSRLFKDAIRSVSPTIEDVG 124
           +T  Y+AR FGV S MPT QA +L P   ++P    +Y++ S+  +   +  +  IE + 
Sbjct: 46  STCNYQARKFGVRSAMPTAQALKLCPQLHVVPGRMSVYKSVSQQIQTIFQRYTSLIEPLS 105

Query: 125 IDEVYADLS---LLNDESEQIARKLKSAVFEATNLTCSVGIAPNKLLAKLCSDIQKPDGI 181
           +DE Y D+S        +  IA+ ++  +++  NLT S G+AP K LAK+ SD+ KPDG+
Sbjct: 106 LDEAYLDVSESTAYQGSATLIAQAIRRDIWQELNLTASAGVAPIKFLAKVASDLNKPDGL 165

Query: 182 TILRLEDLQARIWPMAAKKINGIGPKANAKLTSLGITTIGEIAACSEQWLIEQFGRSYGA 241
            ++  + +Q  +  +  +KI G+G  A  KL   G+    ++     + L+ QFGR  GA
Sbjct: 166 YVVTPDKVQEMVDSLPLEKIPGVGKVALEKLHQAGLYVGADVRRADYRKLLHQFGR-LGA 224

Query: 242 WLHRVSHGLDDRPVVTHSEPVSMSRETTFEQDLHAVRHRQEL--GTAFTRLCEQVALDLQ 299
            L + SHG+D+R VVT  E  S+  E TF Q++   +   ++     +  L  +++    
Sbjct: 225 SLWKKSHGIDEREVVTERERKSVGVEYTFSQNISTFQECWQVIEQKLYPELDARLSRAHP 284

Query: 300 RKGYLARRIGIKLRFNDFQTVTRDVTLPEPVADAKALRHAATQCLKRVDLVKSIRLLGV 358
           ++G + +  GIK++F DFQ  T  +    P  +         Q L R    + IRLLG+
Sbjct: 285 QRGIIKQ--GIKVKFADFQQTT--IEHVHPALELDYFHELLEQVLTR-QQGREIRLLGL 338