Pairwise Alignments

Query, 381 a.a., DNA-directed DNA polymerase from Burkholderia phytofirmans PsJN

Subject, 359 a.a., DNA polymerase IV (RefSeq) from Shewanella loihica PV-4

 Score =  186 bits (473), Expect = 7e-52
 Identities = 123/363 (33%), Positives = 188/363 (51%), Gaps = 34/363 (9%)

Query: 5   RRIAHIDMDAFFASCELSQYPELRGQAMVVAGRRSDAPRVNADGTREFARLRDYAGRGVL 64
           ++I H+DMD FFA+ E+  +PELRG+ + V GR SD                    RGV+
Sbjct: 2   KKIIHVDMDCFFAAVEMRDFPELRGKPIAVGGR-SDR-------------------RGVI 41

Query: 65  TTATYEARAFGVHSGMPTMQAARLAPDAILLPVNFDLYRTYSRLFKDAIRSVSPTIEDVG 124
           +T  YEAR FGV S M +  A +L PD IL+P    +Y+  S   ++     +  IE + 
Sbjct: 42  STCNYEARKFGVRSAMASAYALKLCPDLILVPGRMSVYKEVSAQIREVFARYTELIEPLS 101

Query: 125 IDEVYADLSLLNDESEQ---IARKLKSAVFEATNLTCSVGIAPNKLLAKLCSDIQKPDGI 181
           +DE Y D+S           IA  ++  +FE T LT S GIAP K LAK+ SD+ KP+G 
Sbjct: 102 LDEAYLDVSDCTQHQGSATLIAEAIRREIFEVTGLTASAGIAPVKFLAKIASDLNKPNGQ 161

Query: 182 TILRLEDLQARIWPMAAKKINGIGPKANAKLTSLGITTIGEIAACSEQWLIEQFGRSYGA 241
            ++  + +   +  +A  KI G+G    AKL ++G+ T  ++ ACS Q L+E+FG+ +G 
Sbjct: 162 YVITPQMIPEFVKTLALIKIPGVGKVTAAKLETMGLITCADVQACSRQSLMERFGK-FGG 220

Query: 242 WLHRVSHGLDDRPVVTHSEPVSMSRETTFEQDLHAVRHRQELGTAFTRLCEQVALDLQRK 301
            L+  + G+D R +  H E  S+  ETT  +D++     Q       +L ++++  + R 
Sbjct: 221 VLYDRAQGIDPRGISPHRERKSVGVETTLAKDIYTYEQCQ---AVMPQLIQELSGRISRS 277

Query: 302 GYLARRIG---IKLRFNDFQTVTRDVTLPEPVADAKALRHAATQCLKRVDLVKSIRLLGV 358
              +RRI    +KL+F+DF+  T +    E     K       Q L+R    + IRLLGV
Sbjct: 278 A-KSRRIHKQVVKLKFDDFKQTTIEQRSDE--VSVKLFYDLLKQALER-RAGRGIRLLGV 333

Query: 359 KAG 361
             G
Sbjct: 334 SVG 336