Pairwise Alignments

Query, 246 a.a., type III secretion protein from Burkholderia phytofirmans PsJN

Subject, 376 a.a., flagellar biosynthesis protein FlhB from Vibrio cholerae E7946 ATCC 55056

 Score = 84.7 bits (208), Expect = 2e-21
 Identities = 70/253 (27%), Positives = 121/253 (47%), Gaps = 16/253 (6%)

Query: 3   DKTEAPTPNRLRRARKDGDIAKSTH---VSVAVSG---LFWLLFLLMDAPHVYQVCVHVV 56
           ++TE  TP RL++A++ G +A+S     VSV V G   L W   +L     V    +  +
Sbjct: 8   ERTEEATPRRLQQAKEKGQVARSKELASVSVLVVGAVSLMWFGEILAKGLMVAMQRLFEL 67

Query: 57  EVATQIDQGQPFAVRYLQITRAFGAAMPIL--LATLGVGALAVVVPEVAQAGGV-FAVKR 113
                 D G+ F +    +       +P+L  L+TL + AL       A  GG+ F+ + 
Sbjct: 68  SREEIFDLGKLFDIIGGSLVNLL---LPLLMILSTLFIAALI----GAAGVGGISFSAEA 120

Query: 114 ALPDFKRLNPVTGLKNLFGLKTLIDTGIVLMQFCILVFVLWHAFATWCAQLLPAFALAFG 173
           A+P   ++NP++GLK +FG+++ ++    +++  ++  V ++        L       + 
Sbjct: 121 AMPKLSKMNPLSGLKRMFGMQSWVELLKSILKVLLVSGVAFYLIEASQKDLFQLSLDVYP 180

Query: 174 GQLSVTAQSLAQLQGLMAASQLAPAAIDFWLQRLQWRRRLRMDKNEIKREHRDEDGDPHV 233
             +      L     L++ S L   AID   Q  Q   +L+M K E+K E++D +G P V
Sbjct: 181 QNIFHALDILLNFVLLISCSLLVVVAIDIPFQIWQHAEQLKMTKQEVKDEYKDTEGKPEV 240

Query: 234 KGRRRALHRELSR 246
           KGR R L RE ++
Sbjct: 241 KGRIRMLQREAAQ 253