Pairwise Alignments

Query, 549 a.a., sugar ABC transporter ATP-binding protein from Burkholderia phytofirmans PsJN

Subject, 520 a.a., ABC transporter for L-fucose, ATPase component (from data) from Herbaspirillum seropedicae SmR1

 Score =  381 bits (978), Expect = e-110
 Identities = 211/524 (40%), Positives = 319/524 (60%), Gaps = 22/524 (4%)

Query: 22  TGMTGAAATQAGGTTNALEPILATAGVSKTFPGVKALQRVDFRLFPGEIHTLMGQNGAGK 81
           T  TG AA+ +        P++A   V K FPGV AL    F L  GE+H LMG+NGAGK
Sbjct: 7   TSTTGVAASSSSSV-----PVIALRNVCKRFPGVLALDNCQFELAAGEVHALMGENGAGK 61

Query: 82  STLINVLTGVLAPDEGTIRLGGELVAFASPQEAEGAGVRTLYQEVNLCPNLSVAENIFAG 141
           STL+ +L+GV   D G I L G+ V    P++A+  G+  ++QE+NL  +LS A+NIF G
Sbjct: 62  STLMKILSGVYQRDSGDILLDGKPVEITEPRQAQALGIGIIHQELNLMNHLSAAQNIFIG 121

Query: 142 RQPRRFGA--IDWPDIKRRAQAALARLDVTLDVTRSLDAYPIAVQQMVAIARALSVDARV 199
           R+PR+     ID  ++ R+A A  AR+ + +D +  +    +A QQMV IA+ALS D+RV
Sbjct: 122 REPRKAMGLFIDEDELNRQAAAIFARMRLDMDPSTPVGELTVARQQMVEIAKALSFDSRV 181

Query: 200 LILDEPTSSLDDGEVSQLFKILRHLKQSGIAILFVTHFIEQTYAISDRITVMRNGEREGE 259
           LI+DEPT++L++ E+++LF+I+R L+  G+ I++++H +++   I+DR++VMR+G+    
Sbjct: 182 LIMDEPTAALNNAEIAELFRIIRDLQAQGVGIVYISHKMDELRQIADRVSVMRDGKYIAT 241

Query: 260 YLARDLPADQLVSKMVGHERMSARLREAAHEGHQGHEAHAGPQAAQAVQPFVELRGVGRR 319
              ++   D ++S MVG           A +G Q       P         +E+RG+ R 
Sbjct: 242 VPMQETSMDTIISMMVGR----------ALDGEQ-----RIPPDTSRNDVVLEVRGLNRG 286

Query: 320 GTMQPIDLDVQPGQILGLAGLLGSGRTETARLLFGADRADSGTILVEGRPVRLRSPRDAV 379
             ++ +   ++ G+ILG AGL+G+GRTE AR +FGAD  ++G I++ G    ++SP DAV
Sbjct: 287 RAIRDVSFTLRKGEILGFAGLMGAGRTEVARAIFGADPLEAGEIIIHGGKAVIKSPADAV 346

Query: 380 RHGIGYCAEDRKKEGIVAELSIRDNILLALQARRGWWRKISRQRARELADLWIERLGIKA 439
            HGIGY +EDRK  G+   + ++ NI L+   R      + ++  RE A +++ +L IK 
Sbjct: 347 AHGIGYLSEDRKHFGLAVGMDVQANIALSSMGRFTRVGFMDQRAIREAAQMYVRQLAIKT 406

Query: 440 ADAEQPIGLLSGGNQQKALLARWLATDPKLLILDEPTRGIDVAAKFDIMDRLLALCASGL 499
              EQ   LLSGGNQQK ++A+WL  D  +L  DEPTRGIDV AK +I   L AL   G 
Sbjct: 407 PSVEQQARLLSGGNQQKIVIAKWLLRDCDILFFDEPTRGIDVGAKSEIYKLLDALAEQGK 466

Query: 500 SILFISSEISEVLRVSHRVAVLRDRRKIAEVAGKASNEDNIYRL 543
           +I+ ISSE+ EVLR+SHRV V+ + R   E+A   + ++ I +L
Sbjct: 467 AIVMISSELPEVLRMSHRVLVMCEGRITGELARADATQEKIMQL 510



 Score =  103 bits (258), Expect = 1e-26
 Identities = 68/242 (28%), Positives = 124/242 (51%), Gaps = 8/242 (3%)

Query: 309 PFVELRGVGRRG----TMQPIDLDVQPGQILGLAGLLGSGRTETARLLFGADRADSGTIL 364
           P + LR V +R      +     ++  G++  L G  G+G++   ++L G  + DSG IL
Sbjct: 21  PVIALRNVCKRFPGVLALDNCQFELAAGEVHALMGENGAGKSTLMKILSGVYQRDSGDIL 80

Query: 365 VEGRPVRLRSPRDAVRHGIGYCAEDRKKEGIVAELSIRDNILLALQARRGWWRKISRQRA 424
           ++G+PV +  PR A   GIG   ++     ++  LS   NI +  + R+     I     
Sbjct: 81  LDGKPVEITEPRQAQALGIGIIHQELN---LMNHLSAAQNIFIGREPRKAMGLFIDEDEL 137

Query: 425 RELADLWIERLGIKAADAEQPIGLLSGGNQQKALLARWLATDPKLLILDEPTRGIDVAAK 484
              A     R+ +   D   P+G L+   QQ   +A+ L+ D ++LI+DEPT  ++ A  
Sbjct: 138 NRQAAAIFARMRLDM-DPSTPVGELTVARQQMVEIAKALSFDSRVLIMDEPTAALNNAEI 196

Query: 485 FDIMDRLLALCASGLSILFISSEISEVLRVSHRVAVLRDRRKIAEVAGKASNEDNIYRLI 544
            ++   +  L A G+ I++IS ++ E+ +++ RV+V+RD + IA V  + ++ D I  ++
Sbjct: 197 AELFRIIRDLQAQGVGIVYISHKMDELRQIADRVSVMRDGKYIATVPMQETSMDTIISMM 256

Query: 545 AG 546
            G
Sbjct: 257 VG 258