Pairwise Alignments
Query, 786 a.a., general secretion pathway protein GspD from Burkholderia phytofirmans PsJN
Subject, 659 a.a., type II secretion system secretin GspD from Rahnella sp. WP5
Score = 202 bits (515), Expect = 4e-56
Identities = 136/363 (37%), Positives = 198/363 (54%), Gaps = 30/363 (8%)
Query: 358 GNDKEKSDDNQQGGMIQADSATNSLIITAAEPVYRNLRAVIDQLDARRAQVYLEALIVEL 417
G + S + + I AD TNS++ITA + V ++L VI +LD RRAQV +EA+IVE+
Sbjct: 294 GKTAQPSGASNKPMSITADEQTNSIVITAQQDVMQSLEQVITKLDIRRAQVLVEAIIVEV 353
Query: 418 NSNTSGNLGIQWQVANNSIFAGTNLQTGSSNSIVNLTAAAVAAGSTGGLAGALG--NGTL 475
NLGIQW +NN + TG+ S V AA V G+ + + TL
Sbjct: 354 QDGNGLNLGIQW--SNNQVGGTQFTGTGAPISTV---AAGVRQYKKEGIISSDNPLSSTL 408
Query: 476 Q--QGLNIGWIHNIFGVQGLGALLQALSQTADANVLSTPNLITLDNEEAKIVVGTNVPIQ 533
Q G+ G+ + V LL ALS + ++L+TP+++TLDN+EA VG VP
Sbjct: 409 QTFNGMTAGFFSGDWNV-----LLTALSTSNKNDILATPSIVTLDNKEASFNVGQEVPSL 463
Query: 534 TGSYSNLTSATATSAFNTYDRV---DVGLTLHVKPQITDGGILKLQLYTEDSAIVTGTNN 590
+GS + TS N Y V VG L V PQI +G + +++ E S++ T TN+
Sbjct: 464 SGSQT-------TSGDNIYSSVVYKTVGTKLKVTPQINEGDSVLMEIEQEVSSVDTSTNS 516
Query: 591 AATNPAGPEFTKRSIQSTVLADNGEIIVLGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSE 650
+ GP F R+I + VL GE +VLGGL+ D+ + + SKVPLLGDIPWIG LFR
Sbjct: 517 SL----GPTFNTRTISNAVLVRTGETVVLGGLLDDSTKETKSKVPLLGDIPWIGNLFRYT 572
Query: 651 QKTRNKTNLMVFLRPVIISDRGTAQAVTSNRYDYIQGVQGAYKQDN--NLMKDNDDPVVP 708
K NLMVF+RP II D ++++ +Y + Q +Q + ++ +L+ N ++P
Sbjct: 573 STESAKRNLMVFIRPTIIRDDEVYSSISNKKYSHFQKIQKTRQDEDHQDLLTPNTRSILP 632
Query: 709 PMP 711
P
Sbjct: 633 DYP 635
Score = 144 bits (364), Expect = 1e-38
Identities = 99/319 (31%), Positives = 164/319 (51%), Gaps = 16/319 (5%)
Query: 3 LRRVATALLVAGLITAQTAQAQV-----TLNFVNADIDQVAKAIGAATGKTIIVDPRVKG 57
+++ +LLV I T V T +F DI + + KTI++DP V+G
Sbjct: 1 MKKFINSLLVKACILFATLPGIVHAEEFTASFKGTDIKEFIDTVSKNLNKTILIDPSVQG 60
Query: 58 QLNLVSENAVPEDQALKTLQSALRMQGFALV-QDHGVLKVVPEADAKLQGVPTYVGNTPV 116
+++ S + + E+Q + S L + GFA++ D+G+LKVV A+AK+ GVP N+P
Sbjct: 61 TVSVRSYDVLNEEQYYQFFLSVLDVYGFAVIPMDNGLLKVVRSANAKMSGVPIADKNSP- 119
Query: 117 ARGDQVVTQVFVLKNESANNLLPVLRPLISPNNT--VAAYPANNTIVVTDYADNVRRIAQ 174
+GD+++T+V L N L P+LR + V Y +N +++T A V R+ +
Sbjct: 120 GKGDEIITRVVTLLNVPVRELAPLLRQMNDSTGVGNVVHYEPSNVLLLTGRASVVNRLIK 179
Query: 175 IIQGVDSAAGQSVSVVQLKNANAIDIATQLNKMLDPGSIGSTDATLKVSVTADPRTNSLL 234
+++ VD+ Q ++LK A+A ++A +N ++ S G + + L+ + AD RTN+L+
Sbjct: 180 LVERVDAMGDQQRQTIKLKYASAPEMAEMMNNLVREESKGQSSSILQAKIVADERTNTLI 239
Query: 235 IRASNGARLAAARTLAKELDTPTTMPGNIHVVPLRNADATKLAKTLRGMF-----GKGGD 289
I G R AA+ L +LD + GN V L+ A A K+ L G+ GK
Sbjct: 240 ISGPEGVRSRAAK-LVSQLDKDQSSQGNTRVFYLKYAKAEKIVPVLTGITEEMKEGKTAQ 298
Query: 290 -SGSSSNSNDANSFNQNNS 307
SG+S+ + Q NS
Sbjct: 299 PSGASNKPMSITADEQTNS 317
Score = 32.0 bits (71), Expect = 1e-04
Identities = 35/152 (23%), Positives = 63/152 (41%), Gaps = 18/152 (11%)
Query: 117 ARGDQVVTQVFVLKNESANNLLPVLRPLISPNNT----------VAAYPANNTIVVTDYA 166
A GDQ Q LK SA + ++ L+ + + A NT++++
Sbjct: 186 AMGDQQ-RQTIKLKYASAPEMAEMMNNLVREESKGQSSSILQAKIVADERTNTLIISGPE 244
Query: 167 DNVRRIAQIIQGVDS--AAGQSVSVVQLKNANAIDIATQLNKMLDPGSIGSTD-----AT 219
R A+++ +D ++ + V LK A A I L + + G T +
Sbjct: 245 GVRSRAAKLVSQLDKDQSSQGNTRVFYLKYAKAEKIVPVLTGITEEMKEGKTAQPSGASN 304
Query: 220 LKVSVTADPRTNSLLIRASNGARLAAARTLAK 251
+S+TAD +TNS++I A + + + K
Sbjct: 305 KPMSITADEQTNSIVITAQQDVMQSLEQVITK 336
Score = 31.6 bits (70), Expect = 1e-04
Identities = 27/114 (23%), Positives = 51/114 (44%), Gaps = 22/114 (19%)
Query: 124 TQVFVLKNESANNLLPVL-------------RPLISPNN--TVAAYPANNTIVVTDYADN 168
T+VF LK A ++PVL +P + N ++ A N+IV+T D
Sbjct: 267 TRVFYLKYAKAEKIVPVLTGITEEMKEGKTAQPSGASNKPMSITADEQTNSIVITAQQDV 326
Query: 169 VRRIAQIIQGVDSAAGQ---SVSVVQLKNANAIDIATQLNKMLDPGSIGSTDAT 219
++ + Q+I +D Q +V++++ N +++ Q + +G T T
Sbjct: 327 MQSLEQVITKLDIRRAQVLVEAIIVEVQDGNGLNLGIQWSN----NQVGGTQFT 376