Pairwise Alignments

Query, 786 a.a., general secretion pathway protein GspD from Burkholderia phytofirmans PsJN

Subject, 805 a.a., type II secretion system secretin GspD from Ralstonia sp. UNC404CL21Col

 Score =  647 bits (1670), Expect = 0.0
 Identities = 364/710 (51%), Positives = 474/710 (66%), Gaps = 47/710 (6%)

Query: 24  QVTLNFVNADIDQVAKAIGAATGKTIIVDPRVKGQLNLVSENAVPEDQALKTLQSALRMQ 83
           +V+LNFVNAD+D V KA+G ATGK  IVDPRVKG +NLV+E  V   QAL++L S LRMQ
Sbjct: 53  EVSLNFVNADLDSVVKAVGQATGKNFIVDPRVKGTVNLVTEKPVTRSQALESLGSILRMQ 112

Query: 84  GFALVQDHGVLKVVPEADAKLQGVPTYVGNTPVARGDQVVTQVFVLKNESANNLLPVLRP 143
           G+A+V+ +G  KVVPEADAKLQG PT VG      G+QVVTQVF L++ESANNL+PVLRP
Sbjct: 113 GYAIVEGNGFTKVVPEADAKLQGSPTSVGAAGARGGEQVVTQVFRLQHESANNLVPVLRP 172

Query: 144 LISPNNTVAAYPANNTIVVTDYADNVRRIAQIIQGVDSAAGQSVSVVQLKNANAIDIATQ 203
           +I+PNNT+ AYPANNT+V+TDYADN+RRI +II  +D+       ++ LKNA AID+A  
Sbjct: 173 MIAPNNTITAYPANNTLVITDYADNLRRIGRIIASIDTPVAGETELIPLKNAVAIDVAAT 232

Query: 204 LNKMLDPGSIGS----------TDATLKVSVTADPRTNSLLIRASNGARLAAARTLAKEL 253
           L K+LDP + G+          +D +L+ SV A+PR+NS+++RAS+ ARLA A+ L  +L
Sbjct: 233 LQKLLDPSAGGAGGAAGAGAALSDPSLRTSVVAEPRSNSVMVRASSAARLAQAKQLIAKL 292

Query: 254 DTPTTMPGNIHVVPLRNADATKLAKTLRGMFGKGGDSGSSSNSNDANSFNQNNSGGIGGN 313
           D P   PGNI VVPL+NA+A +LA TLR +        +S+            S G GG 
Sbjct: 293 DVPNARPGNIWVVPLKNANAVQLATTLRAIVAADATLSASA------------STGPGGQ 340

Query: 314 NSTGSSGTPPLPSGG---LGSSSLASPMGGSGSGGGYGAGGSNNGGFGNDKEKSDDNQQG 370
           ++  + G    P+GG   L + +  +   GSGSG G G+GG ++  F     +++    G
Sbjct: 341 SA--AQGATSQPAGGVSNLQNQNTQNTNYGSGSGSGSGSGGGSS-SFRASFGQNNTPTTG 397

Query: 371 GMIQADSATNSLIITAAEPVYRNLRAVIDQLDARRAQVYLEALIVELNSNTSGNLGIQWQ 430
           G+IQAD ATN+LIITA+EPVYRNLRAVID LDARRAQVY+E++IVE+ +  +  LGIQW 
Sbjct: 398 GIIQADPATNALIITASEPVYRNLRAVIDDLDARRAQVYIESMIVEVTATKASQLGIQWL 457

Query: 431 VANNS----IFAGTNLQTGSSNSI-VNLTAAAVAAGSTGGLAGALGNGTLQQGLNIGWIH 485
           V        I  GTN  TGS N I +  T AA+ +G  GG A      T    LN+G ++
Sbjct: 458 VGGGGPGTFIGGGTNYGTGSGNLISLAGTIAAIGSGGIGGTAAQ----TALTSLNVGQLN 513

Query: 486 -NIFGV----QGLGALLQALSQTADANVLSTPNLITLDNEEAKIVVGTNVPIQTGSYSNL 540
              FGV     GLG LL AL      NVLSTPNLITLDNEEAKI++G NVPI TGSY+  
Sbjct: 514 GGNFGVFNRGSGLGVLLSALGSDGSVNVLSTPNLITLDNEEAKILIGQNVPITTGSYAQT 573

Query: 541 TSATATSAFNTYDRVDVGLTLHVKPQITDGGILKLQLYTEDSAIVTGTNNAATNPAGPEF 600
            ++ + S F T+DR DVG+TL VKPQITDGG++K+Q++ E SA+V GT NA     GP  
Sbjct: 574 GTSASVSPFQTFDRKDVGITLRVKPQITDGGLVKMQIFQESSAVVPGTQNAT---QGPTT 630

Query: 601 TKRSIQSTVLADNGEIIVLGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSEQKTRNKTNLM 660
             RSI++ VLA++G+++VLGGL++DNYQ    KVP LGDIP +G LFRSE KTR KTNL+
Sbjct: 631 NVRSIETNVLANDGQVVVLGGLLEDNYQDGEQKVPGLGDIPILGALFRSENKTRVKTNLL 690

Query: 661 VFLRPVIISDRGTAQAVTSNRYDYIQGVQGAYKQDNNL--MKDNDDPVVP 708
           VFLRP+I+       A++ NRY+Y++  Q  +   N L    D D PV+P
Sbjct: 691 VFLRPIILRTADATGALSDNRYNYMRDTQQGFVSPNMLPTTSDKDTPVLP 740