Pairwise Alignments

Query, 351 a.a., ABC transporter permease from Burkholderia phytofirmans PsJN

Subject, 302 a.a., high-affinity branched-chain amino acid ABC transporter, permease protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  105 bits (261), Expect = 2e-27
 Identities = 90/347 (25%), Positives = 159/347 (45%), Gaps = 66/347 (19%)

Query: 1   MDLSIAAILAQDGITTGAIYALLALALVLVFSVTRVIFIPQGEFVSYGALTLAALQTQKF 60
           MD      L   G+T G+IYAL+AL   +V+ +  +I    GE    GA T         
Sbjct: 1   MDWQYFCELLFGGLTRGSIYALIALGYTMVYGIIELINFAHGEVYMIGAFT--------- 51

Query: 61  PATCWLLMAMGAACFVVEIAGLVRHPERRRHAARTLVMLVGKYLLFPIAVYALTQGVFMH 120
                       A  V  + G+   PE        ++++     +   A Y  T      
Sbjct: 52  ------------ALIVAGVLGIYGFPEAG------ILIIAAIVAVIYCAAYGFT------ 87

Query: 121 TLPMIAQIALTLLIVIPMGPYVYRLAYEPIAEATTLLLLIVAVAVHFAMVGLGLVMFGAE 180
                                + ++AY+P+ +A  L  LI A+ +   +    ++   A+
Sbjct: 88  ---------------------LEKVAYKPLRDAPRLSPLISAIGMSIFLQNYVIL---AQ 123

Query: 181 GSRTTAFSDATFNIGTLT----ISGQS--LWVVGTAVVLIGALYLYFDRSISGKALRATS 234
            S    F     ++  L     I+G S  L +V +A+ ++G L L+   +  GKA+RAT+
Sbjct: 124 TSDFVPFPRLVPDLAILEPIAHITGTSDVLIIVTSAITMVG-LTLFIKYTRMGKAMRATA 182

Query: 235 VNRLGARLVGIGTTQAGRLAFTLAAGLGALCGILVAP-LTTIYYDSGFLIGLKGFVGAII 293
            NR  A L+GI   +   L F + + L A+ G+L+A  +  + +  GF+ G+K F  A++
Sbjct: 183 QNRKMAMLLGIDADRVISLTFIIGSSLAAIGGVLIASHIGQVNFAIGFIAGIKAFTAAVL 242

Query: 294 GGLVSYPLAAAGSILVGLLESYSSFWASA-YKEVIVFTLIIPVLLWR 339
           GG+ S P A AG +++GL ES+++ + S+ Y++ + F L++ +L++R
Sbjct: 243 GGIGSIPGAMAGGLVLGLCESFATGYVSSDYEDALAFALLVLILIFR 289