Pairwise Alignments

Query, 790 a.a., hypothetical protein from Burkholderia phytofirmans PsJN

Subject, 568 a.a., TPR domain protein, putative component of TonB system from Xanthomonas campestris pv. campestris strain 8004

 Score =  179 bits (453), Expect = 5e-49
 Identities = 160/562 (28%), Positives = 239/562 (42%), Gaps = 46/562 (8%)

Query: 233 LAPLRKAAELFPEELESRTVLADTLRLKGLPAETEQECRKILAINPDYAEAQRIFGMSLV 292
           L  LR A    P++  +  +LAD     G     E   ++ LA++P + EA    G    
Sbjct: 9   LLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRW 68

Query: 293 HQGRVAEGLAAARRAIELAPNNSTAYSTLGVLLLDLGFVSEAEKEFRAALEKDPKD-HIA 351
            Q R AE     ++A + AP +      LG  L D G    A   +  A +  P++ +I 
Sbjct: 69  TQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYIT 128

Query: 352 AN-----------NFLFTLSHNPE---------------IDHGTLFAEHTNFARQHEDPV 385
           A              L  LS                   +      AE    AR     +
Sbjct: 129 AQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLSEDASAAEQLACARTRAQAI 188

Query: 386 RAQW----PRHVNKRSPDRKLKIGLVSGDLFRHAVASYLLPIMEHLAK-DPNLSLHVYNN 440
            A      P  V  + P   L++G VS     H      + + E L +  P+L +H++  
Sbjct: 189 AASVRPLAPTRVRSKGP---LRVGFVSNGFGAHPTGLLTVALFEALQRRQPDLQMHLFAT 245

Query: 441 HIAEDDYTQLLRNCADEWHQITGMPDAQLANKIRDERIDILFDLSGHTGRNRLLTFARKP 500
              +    +     A   H +T +     A  IR   ID+LFDL G  G  R   FA +P
Sbjct: 246 SGDDGSTLRTRLAQASTLHDVTALGHLATAKHIRHHGIDLLFDLRGWGGGGRPEVFALRP 305

Query: 501 APIQVTWMGYPGTTGLSAMDYYLADKYGVPFGPA-ENQFSEKIVHLPSSATFLPEQSA-- 557
           AP+QV W+ YPGT+G   MDY L D + +P  PA E  +SE ++ L  +  F P  ++  
Sbjct: 306 APVQVNWLAYPGTSGAPWMDYVLGDAFALP--PALEPFYSEHVLRLQGA--FQPSDTSRV 361

Query: 558 ---PPVNILPAMHNGYVTFGSFNRLNKLRRDVIALWAELLRAQPTAKMLLGAIATDEDEQ 614
              PP      +    V    FN   KL    +A    +LR  P + + L +   + D +
Sbjct: 362 VAEPPSRTQCGLPEQGVVLCCFNNSYKLNPQSMARMLAVLREVPDSVLWLLSGPGEADAR 421

Query: 615 LLIDWFAGEGIERERLMFRRRSSIPVYLQQHFHVDICLDTFPYTGSTTVLNSLWMGVPTL 674
           L     A +G++ +RL+F  +   P YL ++ H D+ LDT PY   TT  ++LW G P L
Sbjct: 422 LRAFAHA-QGVDAQRLVFMPKLPHPQYLARYRHADLFLDTHPYNAHTTASDALWTGCPVL 480

Query: 675 TIAGDTLASRAGTTWMSHVGLDDFVVANKEEFVARGVALASDLPALADIRTGLRERCAAS 734
           T  G+T A+R   +   H+GLD+  VA+   FVA+ VALASD  AL  +   +     AS
Sbjct: 481 TTPGETFAARVAGSLNHHLGLDEMNVADDAAFVAKAVALASDPAALTALHARVDVLRRAS 540

Query: 735 AAFRPEVVAAGVSRALRIMWQR 756
             F  +  A      L+ + +R
Sbjct: 541 GVFHMDGFADDFGALLQALARR 562



 Score = 29.3 bits (64), Expect = 6e-04
 Identities = 17/50 (34%), Positives = 23/50 (46%)

Query: 197 EAVKLARSLTQRFPADGNSWRWLGIALHRLGRYDEALAPLRKAAELFPEE 246
           EA  L +  +   P       WLG AL   G+ + A A   +A +L PEE
Sbjct: 75  EAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE 124



 Score = 26.2 bits (56), Expect = 0.005
 Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 4/63 (6%)

Query: 50  LDANPKHADVLYNLGVLLGQTARTAEALPLFEQCLGLHP-HNG-QYWAAYISALIDAGET 107
           L  +P H + +  LG +     R AEA  L +Q     P H G   W  +  AL DAG+ 
Sbjct: 50  LALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGH--ALEDAGQA 107

Query: 108 AAA 110
            AA
Sbjct: 108 EAA 110