Pairwise Alignments

Query, 244 a.a., RNA polymerase sigma70 from Burkholderia phytofirmans PsJN

Subject, 246 a.a., RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG from Pseudomonas syringae pv. syringae B728a

 Score =  223 bits (567), Expect = 4e-63
 Identities = 113/235 (48%), Positives = 158/235 (67%)

Query: 1   MYNAQGKISQAEVLTKYAPLVRRLGLQLVAKMPASVDLDDLIQAGMIGLLDAAGRYKEDQ 60
           MY+   + SQ E++ +YAPLV+R+   L+A++PASV ++DLIQAGMIGLL+ + +Y   +
Sbjct: 8   MYSKTSRNSQYELIERYAPLVKRIAYHLLARLPASVQVEDLIQAGMIGLLEVSTKYDSTK 67

Query: 61  GAQFETYASQRIRGAMLDELRSNDWLPRSLRRTSREVETAVHKVEQNLGRSASETEIAEH 120
           GA FETYA  RIRGAMLDE+R  DW PRS+ R +R V  A+  +E   GR A + E+A  
Sbjct: 68  GASFETYAGIRIRGAMLDEVRKGDWAPRSVHRNTRMVSDAIRAIEAKTGRDAKDHEVAAE 127

Query: 121 LQMPLDEYQSMLQDLHGSQLIYYEDFDRSADDEPFLDRYCVDHSDPLSALLDDSLRSALV 180
           LQ+ LD+Y  +L D  GS+L  ++D  +  D E   +       +P   L D+  ++AL 
Sbjct: 128 LQLSLDDYYGILNDTLGSRLFSFDDLLQDGDHEGLHEDGASGSLEPSRDLEDERFQAALA 187

Query: 181 EAIDRLPDREKLLMSLYYERGMNLREIGAVMEVSESRVCQLHSQAVARLRTRLRE 235
           +AI  LP+RE+L+++LYY+  +NL+EIG V+ VSESRV QLHSQ  ARLR RL E
Sbjct: 188 DAIANLPERERLVLALYYDEELNLKEIGEVLGVSESRVSQLHSQCAARLRGRLGE 242