Pairwise Alignments

Query, 244 a.a., RNA polymerase sigma70 from Burkholderia phytofirmans PsJN

Subject, 242 a.a., RNA polymerase sigma factor FliA from Rhodanobacter denitrificans MT42

 Score =  207 bits (527), Expect = 2e-58
 Identities = 111/225 (49%), Positives = 147/225 (65%), Gaps = 1/225 (0%)

Query: 9   SQAEVLTKYAPLVRRLGLQLVAKMPASVDLDDLIQAGMIGLLDAAGRYKEDQGAQFETYA 68
           S  E++ ++APLVRR+   L+ ++PASVD+ DLIQAGMIGLL+AA  +  D+GA FETYA
Sbjct: 14  SADELVRRHAPLVRRIAYHLMGRLPASVDVGDLIQAGMIGLLEAARHFAHDKGASFETYA 73

Query: 69  SQRIRGAMLDELRSNDWLPRSLRRTSREVETAVHKVEQNLGRSASETEIAEHLQMPLDEY 128
             RIRGAMLDELR  DW PRS+ R +REV   + ++E   G  A + E+   L +  +EY
Sbjct: 74  GIRIRGAMLDELRKTDWTPRSVHRKTREVAETIRQIETETGAEADDAEVIRRLGISAEEY 133

Query: 129 QSMLQDLHGSQLIYYEDFDRSADDEPFLDRYCVDHSDPLSALLDDSLRSALVEAIDRLPD 188
             +L D    +L+     D   ++   LD        P   +  D +R AL EAI  LP+
Sbjct: 134 HQVLADAACVRLLSLTASD-DGEEGTVLDVADEGSLGPSENIERDGMREALAEAIGGLPE 192

Query: 189 REKLLMSLYYERGMNLREIGAVMEVSESRVCQLHSQAVARLRTRL 233
           RE+L+MSLYYE+ +NL+EIGAV+ VSESRVCQ+H QAV RLR RL
Sbjct: 193 REQLVMSLYYEQELNLKEIGAVLGVSESRVCQIHGQAVIRLRARL 237