Pairwise Alignments

Query, 244 a.a., RNA polymerase sigma70 from Burkholderia phytofirmans PsJN

Subject, 240 a.a., RNA polymerase sigma factor FliA from Rahnella sp. WP5

 Score =  239 bits (609), Expect = 5e-68
 Identities = 123/235 (52%), Positives = 169/235 (71%), Gaps = 4/235 (1%)

Query: 1   MYNAQGKISQAEVLTKYAPLVRRLGLQLVAKMPASVDLDDLIQAGMIGLLDAAGRYKEDQ 60
           +Y A G I +  +  +Y PLVR   L+L  ++PASV+LDDL+QAG IGLL+A  R+   Q
Sbjct: 4   LYTADGVIDKNSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERFDAMQ 63

Query: 61  GAQFETYASQRIRGAMLDELRSNDWLPRSLRRTSREVETAVHKVEQNLGRSASETEIAEH 120
           G  F TYA QRIRGAMLDELRS DW+PRS+RR +REV  A+H  EQ LGR  SE E+A+ 
Sbjct: 64  GTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVSQAMHSAEQKLGRPPSEGEVAQV 123

Query: 121 LQMPLDEYQSMLQDLHGSQLIYYEDFDRSADD--EPFLDRYCVDHSDPLSALLDDSLRSA 178
           L +P++EY+ +L D + SQL  Y+++     D  E  ++ +  + ++PL  LL+ +LR  
Sbjct: 124 LDIPIEEYRQILMDTNSSQLFSYDEWREEHGDTAEALMEGH--EEANPLHHLLEGNLRHR 181

Query: 179 LVEAIDRLPDREKLLMSLYYERGMNLREIGAVMEVSESRVCQLHSQAVARLRTRL 233
           ++EAID LP+REKL+++LYY+  +NL+EIGAV++V ESRV QLHSQA+ RLRTRL
Sbjct: 182 VMEAIDALPEREKLVLTLYYQEELNLKEIGAVLDVGESRVSQLHSQAIKRLRTRL 236