Pairwise Alignments

Query, 244 a.a., RNA polymerase sigma70 from Burkholderia phytofirmans PsJN

Subject, 255 a.a., RNA polymerase sigma factor FliA from Lysobacter sp. OAE881

 Score =  226 bits (577), Expect = 3e-64
 Identities = 120/232 (51%), Positives = 159/232 (68%), Gaps = 2/232 (0%)

Query: 4   AQGKISQAEVLTKYAPLVRRLGLQLVAKMPASVDLDDLIQAGMIGLLDAAGRYKEDQGAQ 63
           A   ++  EV+ K+  LVRR+   L A++PASV++DDLIQAGM+GL+DAA  ++ DQGA 
Sbjct: 14  AADTVNATEVVEKHGELVRRIAHHLAARLPASVEIDDLIQAGMLGLIDAARNFQADQGAA 73

Query: 64  FETYASQRIRGAMLDELRSNDWLPRSLRRTSREVETAVHKVEQNLGRSASETEIAEHLQM 123
           FETYAS RIRGAM+DE+R  DW+PRS+ R  R+V  A  +VEQ+ GR+A+  E+A  L +
Sbjct: 74  FETYASIRIRGAMIDEIRRGDWVPRSVHRRYRDVVAATREVEQSTGRAATAQEVATRLAV 133

Query: 124 PLDEYQSMLQDLHGSQLIYYEDFDRSADDEPFLDRYCVDHSDPLSALLDDSLRSALVEAI 183
           PLDEY  ML+D    QLI  E      D EP L  +    + P       + + AL  AI
Sbjct: 134 PLDEYHRMLEDAARGQLISLEAHVDEHDGEPHLGGHA--GATPAREFEQVAFKQALGAAI 191

Query: 184 DRLPDREKLLMSLYYERGMNLREIGAVMEVSESRVCQLHSQAVARLRTRLRE 235
             LP+RE+L++SLYYE+ +NLREIGAV+ VSESRVCQ+H QA+ RLR+RL E
Sbjct: 192 GNLPEREQLVLSLYYEQELNLREIGAVLNVSESRVCQIHGQAMLRLRSRLGE 243